BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0122.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 259 4e-69 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 204 2e-52 RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 189 6e-48 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 183 4e-46 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 179 8e-45 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 259 bits (663), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 143/264 (54%), Positives = 189/264 (71%), Gaps = 8/264 (3%) Query: 34 LSIAEEIDALT-DPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTL 92 LS A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 93 RQLGYADADVNNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSE 152 QLGYA D +SL PK+LTLG++YLSSTPL +++QP L+ +S L E+CS+A L+ + Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 153 VLYVARSAA-SRVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLR 211 VLY+ARSA R++SV LN PA +GR +LA L +D L AYFG V+++ Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCT------SMGRILLAALDDDALHAYFGGVEMQ 190 Query: 212 AMTDKTVVSQKRLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQA 271 A T +T+ + + L L +R G+ ++D+ELEVGLRS+AVPVR + G+V+AALNVG A Sbjct: 191 AKTSRTLYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHA 250 Query: 272 TRVSRRQMEEQFLPVLKRGAEELS 295 RVSR ++E +FLP+L + ELS Sbjct: 251 GRVSRAELESRFLPLLLEASRELS 274 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 158/246 (64%), Gaps = 6/246 (2%) Query: 43 LTDPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLRQLGYADADV 102 + + F++ ARGL VI AF +++ L+IA ++ TG+ RA VRR L TL QLGYAD D Sbjct: 1 MRETDFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDG 60 Query: 103 NNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEVLYVARSAAS 162 F+L PK L LG++YLS+TPL QPYL+ ++ G+S S +VLD +E++YVAR++ Sbjct: 61 KFFTLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQR 120 Query: 163 RVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAMTDKTVVSQK 222 RVMS+ L PA A +GR +LA LPE + + G+ +L+A T T + Sbjct: 121 RVMSINLTPGSRLPAYCAS------MGRVLLAALPEAEAREILGRSELKANTPLTRTDPE 174 Query: 223 RLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATRVSRRQMEEQ 282 L L VRD+GYA+ID+ELE+GL SIAVPV G V+AALN+G A V R+M E+ Sbjct: 175 ELLTELRRVRDEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAER 234 Query: 283 FLPVLK 288 FLP+L+ Sbjct: 235 FLPLLR 240 >RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 275 Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 155/249 (62%), Gaps = 6/249 (2%) Query: 47 SFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLRQLGYADADVNNFS 106 S++ S ARGL+VIRAF R + T++++++ TG+ RA RR L TL LGY + F Sbjct: 26 SYVQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYVSFEGRLFR 85 Query: 107 LRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEVLYVARSAASRVMS 166 L P+IL LG++YL+S P ++P + + +T+ ESCS +VLD +E++YV R ++++ Sbjct: 86 LTPRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYVLRVPTQKIIA 145 Query: 167 VALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAMTDKTVVSQKRLRE 226 + L+ PA +GR +L+ LPED+L + R T +T+ L++ Sbjct: 146 LNLSVGSRLPAFCTS------MGRVLLSGLPEDRLDIVLRESDRRPRTQRTITEVDALKD 199 Query: 227 ILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATRVSRRQMEEQFLPV 286 ++AGVR G+AL+D+ELE GL S++ P+R G+++AA+N+ QA R S RQM QFL Sbjct: 200 VIAGVRAQGWALVDQELEEGLISLSTPIRNRAGDIIAAMNISGQANRTSARQMTRQFLGP 259 Query: 287 LKRGAEELS 295 L++ AE +S Sbjct: 260 LQQAAERIS 268 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 155/256 (60%), Gaps = 6/256 (2%) Query: 43 LTDPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLRQLGYADADV 102 + + F+ A+GL VI AF + R L+IA +S+ TG+ RA RRCL TL +LGYA+ D Sbjct: 1 MRETDFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDG 60 Query: 103 NNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEVLYVARSAAS 162 F L P+IL LG++YLS TPL QP+L+ +S+++GES S +VLD +E++Y+AR++ Sbjct: 61 KFFMLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQM 120 Query: 163 RVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAMTDKTVVSQK 222 RV+S+ L PA A +GR +LA L E + + + +LRA T T + Sbjct: 121 RVISINLMAGSRLPAYCA------SMGRVLLAWLDESEARTILEQTELRARTPFTQKDPE 174 Query: 223 RLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATRVSRRQMEEQ 282 +L E L +R G+A+ D+ELE+GLRSIAVPV G VVAALN+G V + + Sbjct: 175 KLMEELRRIRAQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGR 234 Query: 283 FLPVLKRGAEELSILL 298 LP + + EL +L Sbjct: 235 ILPEMLKIQSELRSML 250 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 179 bits (454), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 150/250 (60%), Gaps = 6/250 (2%) Query: 46 PSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLRQLGYADADVNNF 105 P F+ S ARGL+VIR+F+ S T+++++ +TG+ RA RR LHTL LGYA + + F Sbjct: 6 PDFVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDSRF 65 Query: 106 SLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEVLYVARSAASRVM 165 L P++L LG SYLS+ L +QP L +SR +GES S++VLD ++++YV R R+M Sbjct: 66 QLTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRRIM 125 Query: 166 SVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAMTDKTVVSQKRLR 225 +V + PA +GR MLA+LPE++L +T +++ S +R Sbjct: 126 TVNITIGTRFPAYATS------MGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIR 179 Query: 226 EILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATRVSRRQMEEQFLP 285 E + R+ G++L+D+ELE GLRS+A P+ A G VVA++NV Q+ S + + LP Sbjct: 180 EEIIATRERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVEDIRKLVLP 239 Query: 286 VLKRGAEELS 295 L A+ +S Sbjct: 240 QLLETAQAIS 249