BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0107.p         (249 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all2656 [V] COG1680 Beta-lactamase class C and other penicillin ...    70   6e-12
PAB0087 [V] COG1680 Beta-lactamase class C and other penicillin ...    69   1e-11

>all2656 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Nos Nostoc sp. PCC 7120
          Length = 414

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 42  SFTKTVLAAAAMSLVCDGQLTLDAPLPGK-------------PYTLRQLLRHGAGVPNYS 88
           S TKT +A   + LV +  L LD  L  +               TLRQLL H +GVP+Y+
Sbjct: 99  SITKTFVATTTLQLVEEDILNLDDKLTDRLPISVTDWIPNANQITLRQLLNHTSGVPDYT 158

Query: 89  ELGSYAQAVARGD--APWPAEEMLARTDADTLLFAPDAGWRYSNTGYFLVRRLVENATGL 146
           ++     AV  G     W  E +++  D     F P   W+YSNT Y L+  +VE AT  
Sbjct: 159 DVLFRWAAVNPGVFFNNWQPELLVSFIDGLEASFQPGDAWQYSNTNYLLLGMVVEAATNN 218

Query: 147 SLQHALDQLVLTPLGIRNVMLAQ 169
           S+   +   +L PL + N   A+
Sbjct: 219 SIAQEIRDRILEPLALSNTFFAE 241


>PAB0087 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Pab Pyrococcus abyssi
          Length = 447

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 42/199 (21%)

Query: 1   MSIASLSSPPSSPSSEHT----AIAIVRDGQLV----------RGDLQASPAPWW---SF 43
           M +  L S      +E      +I+I++DG +V             L ++P   +   S 
Sbjct: 1   MDVGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSI 60

Query: 44  TKTVLAAAAMSLVCDGQLTLDAPLP----------GKPYTLRQLLRHGAGVPNYSELGSY 93
           TK+  A A M LV +G L+LD P+           G+P T+  LL H +G+P+     ++
Sbjct: 61  TKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAF 120

Query: 94  AQAVARGDAPWPAEEMLARTDADTLLFA----------PDAGWRYSNTGYFLVRRLVENA 143
              +  GD   P       T  +T+ FA          P   + Y NTGY L+ +++E  
Sbjct: 121 IDGMVGGDNWLPVS-----TPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKV 175

Query: 144 TGLSLQHALDQLVLTPLGI 162
           +G+S +  + + +L PLG+
Sbjct: 176 SGVSYEEYIKKKILEPLGM 194