BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0105.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 196 7e-50 CC3644 Non COG 188 1e-47 AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 177 3e-44 SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase... 167 2e-41 PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase ... 64 4e-10 >mll5484 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Mlo Mesorhizobium loti Length = 335 Score = 196 bits (497), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 150/245 (61%), Gaps = 17/245 (6%) Query: 2 SDMVVVRKEGLYCVPGDFHIDPWRPVDRAVITHAHADHARTGHGHYLATADGAGILRARL 61 SD++ R EGLYC PGDF IDP RPV+RA+ITH H+DHAR+GH LAT I+ R Sbjct: 4 SDLLHPRPEGLYCPPGDFFIDPVRPVNRALITHGHSDHARSGHRSVLATQQTLDIMALRY 63 Query: 62 GEI---RLDALRYGESITHNGVALSLHPAGHVLGSAQLRMEHRGEVWVASGDYKLERDGT 118 GE A R GE+I + V++S HPAGHVLGSAQ+ +EH+G VASGDYK ++D T Sbjct: 64 GEDFAGTTQAARLGETIALDSVSVSFHPAGHVLGSAQISVEHQGTRIVASGDYKRQKDAT 123 Query: 119 CAPFESVRCDTFITESTFGMPIYRWQPQAEIFDDINAWWRRNAAE--GRTSVLFCYAFGK 176 CAPFE +RCD FITE+TFG+P++R P E A ++AA+ R+ ++ YA GK Sbjct: 124 CAPFEPIRCDVFITEATFGLPVFRHPPDTEEI----ARLLKSAAQFPERSHLVGAYALGK 179 Query: 177 AQRILHGLDPT--IGSIVCHGAVTPLNALYREAGV---ALPPTLAVGDVEDKAVLRQALV 231 AQR++ L + HGA+ L+ Y+ G+ L P G +D A+V Sbjct: 180 AQRVMRLLRDAGYDRPLYIHGALARLSEYYQSQGIDLGVLEPATVEGGKDD---FTGAIV 236 Query: 232 LAPPS 236 + PPS Sbjct: 237 VGPPS 241 >CC3644 Non COG Length = 342 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 142/244 (58%), Gaps = 15/244 (6%) Query: 2 SDMVVVRKEGLYCVPGDFHIDPWRPVDRAVITHAHADHARTGHGHYLATADGAGILRARL 61 D++ R GLYC PGDF+IDP RPVDRAV+TH HADHAR GHG AT + I+ R Sbjct: 10 EDLLCPRPAGLYCPPGDFYIDPVRPVDRAVVTHGHADHARAGHGVVAATPETLAIMAVRY 69 Query: 62 GEI---RLDALRYGESITHNGVALSLHPAGHVLGSAQLRMEHRGEVWVASGDYKLERDGT 118 GE R + + YGES T +GV+++L PAGHVLGSAQ + +G V SGDYK RD T Sbjct: 70 GEDFAGRREPIPYGESFTRDGVSVTLVPAGHVLGSAQAVVRWKGLTMVVSGDYKRRRDPT 129 Query: 119 CAPFESVRCDTFITESTFGMPIYRWQPQAEIFDDINAWWRRNAA-EGRTSVLFCYAFGKA 177 CA FE V CD FITE+TFG+P++R A +I + A R ++ YA GKA Sbjct: 130 CARFEPVPCDVFITEATFGLPVFRHPDDA---GEIRSLLLSVAQFPDRCHLVGAYALGKA 186 Query: 178 QRILH-----GLDPTIGSIVCHGAVTPLNALYREAGVALPPTLAVGDVEDKAVLRQALVL 232 QR++ G D T I HGA+ LNALY GV L P K +V+ Sbjct: 187 QRVIRLLREAGWDKT---IYVHGALERLNALYEAHGVDLGPLAPATASGPKDAFAGQIVI 243 Query: 233 APPS 236 APPS Sbjct: 244 APPS 247 >AGc1534 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 352 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 141/241 (58%), Gaps = 24/241 (9%) Query: 10 EGLYCVPGDFHIDPWRPVDRAVITHAHADHARTGHGHYLATADGAGILRARLGEIRL--- 66 +GLYC GDF+IDP RPV RA+ITH H+DHAR GHG LAT I+R R GE Sbjct: 28 KGLYCPAGDFYIDPVRPVARALITHGHSDHARAGHGAVLATRQTLDIMRIRYGEDFCGSE 87 Query: 67 DALRYGESITHNGVALSLHPAGHVLGSAQLRMEHRGEVWVASGDYKLERDGTCAPFESVR 126 A+ +GE++ NGV + HPAGHVLGSAQ+ +E G VASGDYK D TCAPFE+V Sbjct: 88 QAVGFGETVEVNGVIVGFHPAGHVLGSAQISVEMNGLRIVASGDYKRGIDPTCAPFETVP 147 Query: 127 CDTFITESTFGMPIYRWQ-PQAEIFDDINAWWRRNAAEGRTSVLFCYAFGKAQRILHGL- 184 CD FITE+TFG+P++ P+ EI + + RT ++ Y+ GKAQR++ L Sbjct: 148 CDVFITEATFGLPVFHHPLPRVEIGKLLTSI---KQFPDRTHLVGAYSLGKAQRVIRLLR 204 Query: 185 -----DPTIGSIVCHGAVTPLNALYREAGVAL----PPTLAVGDVEDKAVLRQALVLAPP 235 DP I HGA+ L Y G+ L P TL + + A + A+V+ PP Sbjct: 205 DNGYADP----IYIHGALARLCDYYVSQGIDLGDLRPATL---EKSNPAAFKGAIVVGPP 257 Query: 236 S 236 S Sbjct: 258 S 258 >SMc03176 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Sme Sinorhizobium meliloti Length = 336 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/240 (44%), Positives = 139/240 (57%), Gaps = 22/240 (9%) Query: 10 EGLYCVPGDFHIDPWRPVDRAVITHAHADHARTGHGHYLATADGAGILRARLGEIRL--- 66 +GLYC GDF+IDP +PV+RA+ITH H+DHAR GHGH LAT + I+R R G+ Sbjct: 12 KGLYCQHGDFYIDPVQPVERALITHGHSDHARAGHGHVLATRETLDIMRLRYGDDFCGAS 71 Query: 67 DALRYGESITHNGVALSLHPAGHVLGSAQLRMEHRGEVWVASGDYKLERDGTCAPFESVR 126 D R+GE+I+ GV + PAGHVLGSAQ+ +E G V SGDYK D TC FE V Sbjct: 72 DVARFGETISIGGVRVRFQPAGHVLGSAQISVEADGTRIVVSGDYKRRPDPTCPSFEPVA 131 Query: 127 CDTFITESTFGMPIYRW-QPQAEIFDDINAWWRRNAAEGRTSVLFCYAFGKAQRIL---- 181 CD FITE+TFG+P++ + EI + + R E R V+ YA GKAQR++ Sbjct: 132 CDVFITEATFGLPVFHHPDDKGEIARLLQSL--RQFPE-RAHVVGAYALGKAQRLIALIR 188 Query: 182 -HGLDPTIGSIVCHGAVTPLNALYREAGVAL----PPTLAVGDVEDKAVLRQALVLAPPS 236 G D I HGA+ L Y+ G+ L P TL E++ L A+VL PP+ Sbjct: 189 QQGYDEPIH---IHGALARLCEYYQSQGIDLGDIRPATLG---PENRQDLAGAIVLGPPA 242 >PAE3418 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing Pya Pyrobaculum aerophilum Length = 314 Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 13/192 (6%) Query: 19 FHIDPWRP----VDRAVITHAHADH-ARTGHGH-YLATADGAGILRARLGEI--RLDALR 70 F +DP P VD +ITH H+DH ++ + H +AT + + R G R + Sbjct: 18 FVVDPTGPLTGPVDFVLITHGHSDHVSKHAYRHTVVATRETFSAMSVRFGNPPPRRVTVA 77 Query: 71 YGESITHNGVALSLHPAGHVLGSAQLRMEHRGEVWVASGDYKLERDGTCAPFESV-RCDT 129 G + GV +++ AGH+LGS E G + +GD+ E + R D Sbjct: 78 PGNVLEIGGVQIAVLEAGHILGSVMYLAEVDGVQILVTGDFNTAGSILTDAAEPIERPDV 137 Query: 130 FITESTFGMPIYRWQPQAEIFDDINAWWRRNAAEGRTSVLFCYAFGKAQRILHGLDPTIG 189 + E+T+G P Y + +AE++++ R +EG ++ Y GKAQ I L G Sbjct: 138 LVMEATYGDPSYVFPNRAEVYEEFLDVVERGISEGGVAIS-AYPLGKAQEIAKLLGNKAG 196 Query: 190 SIVCHGAVTPLN 201 H +V N Sbjct: 197 ---AHASVAKYN 205