BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0100.p         (641 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2177_1 [T] COG2202 FOG Pae Pseudomonas aeruginosa                   301   3e-81
mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo M...   213   1e-54
CC2874_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca...   211   3e-54
AGc2521_2 [T] COG0642 Signal transduction histidine kinase Atu A...   189   3e-47
BMEI0947_2 [T] COG0642 Signal transduction histidine kinase Bme ...   182   3e-45

>PA2177_1 [T] COG2202 FOG Pae Pseudomonas aeruginosa
          Length = 323

 Score =  301 bits (772), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/274 (52%), Positives = 188/274 (68%)

Query: 1   MPSSQPAHLTLTDAQRFQLIISAIHDYAIYMLDPQGKVTSWNKGAQQFTGYSSDDILGSH 60
           M +++   + L  A R +L+  A+ DYAI+ LD  G + SW+ GA +  G+ + +ILG  
Sbjct: 50  MKTTRKPKVPLNQATRNRLLDEAVDDYAIHTLDSAGHIASWSAGAARLFGHDASEILGRD 109

Query: 61  FSVFYTAEDRDAGLPQKALDIALRHGKFEDEGWRLRKDGTTYWASSIIDPIIADNGELLG 120
           ++ F+T +DRDAG+PQ+AL  A   G+FE EGWR+R +G  +WA  +ID I    G+LLG
Sbjct: 110 YACFHTRKDRDAGVPQQALRQADAEGRFETEGWRVRSNGKRFWAQVVIDAIRDSQGQLLG 169

Query: 121 YAKITRDITEHKLAAQTLQASEQQFRLLVQGVTDYAIYMLSPEGRVTNWNAGAQRIKGYT 180
           +A++  D++E + A + L+ S++QFRLLVQ VTDYAIYML   GR+TNWN GAQRIKGY 
Sbjct: 170 FAQLIHDLSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYL 229

Query: 181 ADEVIGMHFSSFYTETDRSDGLPERALATAAEQGRYEQEGLRVRKDGSTFWAHVIVDAIR 240
            +EVIG HFS FYT  DR  G P R LA A  +GR+E+EG RVRKDGS FWA+V++D IR
Sbjct: 230 PEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIR 289

Query: 241 SELGDLIGFAKVTRDVTERRETALALSRANAALF 274
              G LIGFAKVTRD+T R E    L RA   LF
Sbjct: 290 DSDGRLIGFAKVTRDITHRIEAERELERARQELF 323


>mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium
           loti
          Length = 297

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 158/258 (61%), Gaps = 11/258 (4%)

Query: 251 KVTRDVTERRETALALSRANAALFQSQKMEALGQLTGGVAHDFNNLLAVASSGLQLLTVQ 310
           +V  +V ER       S+A   L Q QKM+A+GQLTGG+AHDFNN+LAV   GL LL  +
Sbjct: 23  RVIDEVAER-------SKAEEQLRQVQKMDAVGQLTGGIAHDFNNMLAVIIGGLNLLQRK 75

Query: 311 FPDLEN--SRSLESIRRALSRGAILTQQLLSFARQQPLQPETHEVNTLIADFESVLRRAG 368
               E    R +E       R A LTQ+LL+F+RQQPL+PE    N L+     +L R  
Sbjct: 76  LSKGETDVGRFVEGAMDGAHRAAALTQRLLAFSRQQPLKPEPINANRLVGGMTELLMRTL 135

Query: 369 NSSIQFDIRKSPVPVMVKLDSTRFETALLNLVVNATQAMPDGGKVTIATEKLTLRDKAV- 427
             +I+ +         VK D ++ E+ALLNL VNA  AMP+GGK+TI T    + ++   
Sbjct: 136 GETIKVETAFGAGLWQVKADPSQLESALLNLSVNARDAMPNGGKLTIETSNAYVDERYAR 195

Query: 428 -GALPGGVYAKISVTDNGSGMTPEVQARVFEPFFTTKKAGQGTGLGLSQVYGFITQSGGE 486
             A+  G +  ++VTD G+GMTP+V A+ F+PF+TTK  G+GTGLGLSQVYGF+ QSGG 
Sbjct: 196 ESAIAAGQFVLVAVTDTGTGMTPDVLAKAFDPFYTTKGVGKGTGLGLSQVYGFVRQSGGN 255

Query: 487 VTLLSEVGFGTCFTIYIP 504
           V + SE G GT   IY+P
Sbjct: 256 VRIYSEPGVGTTIKIYLP 273


>CC2874_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter
           vibrioides
          Length = 286

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/277 (46%), Positives = 170/277 (61%), Gaps = 9/277 (3%)

Query: 250 AKVT--RDVTERRETALALSR--ANAALFQSQKMEALGQLTGGVAHDFNNLLAVASSGLQ 305
           AK+T   ++ E R TA    R  A AAL QSQK+EA+GQLTGGVAHDFNNLL V    L 
Sbjct: 10  AKLTGLNELLEERVTAALAERDAAQAALLQSQKLEAIGQLTGGVAHDFNNLLTVIIGALD 69

Query: 306 LLTVQFPD--LENSRSLESIRRALSRGAILTQQLLSFARQQPLQPETHEVNTLIADFESV 363
           ++  + PD      R + +   A  RG  LTQ LL+FAR+QPL+PE   V+ LIA+ E +
Sbjct: 70  VVE-RHPDDARRRERMIGAALAAAKRGEKLTQHLLAFARRQPLKPEICRVDGLIAESEGL 128

Query: 364 LRRAGNSSIQFDIRKSPVPVMVKLDSTRFETALLNLVVNATQAMPDGGKVTIATEKLTLR 423
           L+RA   +  F +R        ++D+ +FE ALLNLVVNA  A P GG+V+I +  +TL 
Sbjct: 129 LKRALGDAYTFHLRLGAGVRSARIDAGQFEAALLNLVVNARDATPPGGEVSIESRPVTL- 187

Query: 424 DKAVGALPGGVYAKISVTDNGSGMTPEVQARVFEPFFTTKKAGQGTGLGLSQVYGFITQS 483
           D+  G L  G Y +++V D G+GM     AR  EPFFTTK  G+GTGLGLSQVYGF  QS
Sbjct: 188 DRKEGDLEPGQYLRVAVRDTGTGMDAATIARAVEPFFTTKPPGEGTGLGLSQVYGFARQS 247

Query: 484 GGEVTLLSEVGFGTCFTIYIPIDA-EADAENTQSADN 519
           GG V + S  G G    + +P+ A +A +E+    D+
Sbjct: 248 GGSVLIESTPGQGATVALLLPVSAGDAASESLPRVDH 284


>AGc2521_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 330

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 146/241 (60%), Gaps = 13/241 (5%)

Query: 273 LFQSQKMEALGQLTGGVAHDFNNLL-AVASSGLQLLTVQFPDLENSRSLESIRRALSRGA 331
           + Q+QKM A+G L GG+AHDFNN+L A+  S   LL    P   +   L  I+R  +R A
Sbjct: 56  MAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAA 115

Query: 332 ILTQQLLSFARQQPLQPETHEVNTLIADFESVLRR---AGNSSIQFDIRKSPVPVMVKLD 388
           +L +QLL+F+R+Q ++P    +  +I D   ++ R     N  ++ D  +   PV  K D
Sbjct: 116 VLVRQLLAFSRKQTMRPAVLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPV--KTD 173

Query: 389 STRFETALLNLVVNATQAMPDGGKVTIATEKLTLRDKAVGAL-----PGGVYAKISVTDN 443
            ++FE  L+NL VNA  AMPDGGK+TI T  +   +K + AL     P      + V DN
Sbjct: 174 LSQFEQVLINLCVNARDAMPDGGKITIRTRNVD--EKEIAALGRPEFPAEDMVMVEVADN 231

Query: 444 GSGMTPEVQARVFEPFFTTKKAGQGTGLGLSQVYGFITQSGGEVTLLSEVGFGTCFTIYI 503
           G+G+ PE+  ++FEPFFTTK+ G+GTGLGLS VYG + QSGG +   SEVG GT F IY+
Sbjct: 232 GTGIPPEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYL 291

Query: 504 P 504
           P
Sbjct: 292 P 292


>BMEI0947_2 [T] COG0642 Signal transduction histidine kinase Bme Brucella
           melitensis
          Length = 269

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/240 (43%), Positives = 143/240 (59%), Gaps = 16/240 (6%)

Query: 275 QSQKMEALGQLTGGVAHDFNNLL-AVASSGLQLLTVQ------FPDLENSRSLESIRRAL 327
           QSQKM+A+GQL GG+AHDFNN+L A+  S   LLT        FPD+ N      I++  
Sbjct: 12  QSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMN------IKQNA 65

Query: 328 SRGAILTQQLLSFARQQPLQPETHEVNTLIADFESVLRRAGNSSIQFDIRKSPVPVMVKL 387
           +R A L +QLL+F+R+Q L+PE  ++  ++AD   +L R     I+  I        VK 
Sbjct: 66  NRAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKA 125

Query: 388 DSTRFETALLNLVVNATQAMPDGGKVTIATEKLTLRDKA---VGALPGGVYAKISVTDNG 444
           D  +FE   +NL VNA  AMP+GG++T+ T  +   D A      LP   Y    V D G
Sbjct: 126 DLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTG 185

Query: 445 SGMTPEVQARVFEPFFTTKKAGQGTGLGLSQVYGFITQSGGEVTLLSEVGFGTCFTIYIP 504
           +G+  +V  ++FEPFFTTK+ G+GTGLGLS VYG I Q+GG +   SEVG GT F I++P
Sbjct: 186 TGIPADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 245