BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0093.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3566 [S] COG1359 Uncharacterized conserved protein Pae Pseudom...    86   2e-17
SMa0325 [S] COG1359 Uncharacterized conserved protein Sme Sinorh...    74   6e-14
YPO1588 [S] COG1359 Uncharacterized conserved protein Ype Yersin...    74   9e-14
NMB1575 [S] COG1359 Uncharacterized conserved protein Nme Neisse...    72   4e-13
NMA1764 [S] COG1359 Uncharacterized conserved protein NmA Neisse...    72   4e-13

>PA3566 [S] COG1359 Uncharacterized conserved protein Pae Pseudomonas
          aeruginosa
          Length = 97

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 2/95 (2%)

Query: 1  MDQKLVIVATLTAKPGHGATLKAALEKVVPPSRAEAGCHRYDLHADNENPELFVMLEEWR 60
          M   L ++AT+TA PGH   L+  L  +V PSRAEAGC +YDLH D  +  LF M+E+WR
Sbjct: 1  MSTPLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWR 60

Query: 61 DATALKEHELTPHFQALVAAVGGIAEIRIRKLTQI 95
          D  AL+ H+ T HF  L  + G  A ++  K+ Q+
Sbjct: 61 DDAALERHQNTEHF--LRFSRGNEALLQNVKIDQL 93


>SMa0325 [S] COG1359 Uncharacterized conserved protein Sme Sinorhizobium
          meliloti
          Length = 100

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query: 5  LVIVATLTAKPGHGATLKAALEKVVPPSRAEAGCHRYDLHADNENPELFVMLEEWRDATA 64
          L  VA  TAKPG    L   L ++V PSR E GC RY++H  N+ P+++++LE+WR A+ 
Sbjct: 4  LTNVAYFTAKPGRSGELGDELLQLVTPSRNEEGCLRYEIHQSNDVPDVWMVLEDWRHASD 63

Query: 65 LKEHELTPHFQALVAAV 81
           K H  TP+ QA +A V
Sbjct: 64 FKLHMNTPYVQAFMAKV 80


>YPO1588 [S] COG1359 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 95

 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 7  IVATLTAKPGHGATLKAALEKVVPPSRAEAGCHRYDLHADNENPELFVMLEEWRDATALK 66
          ++A++ AK      +KAAL +++ PSR E G  +YDLH ++E    FV  E W    AL+
Sbjct: 5  VIASIVAKTEFIEEVKAALHQIIEPSREEKGNLQYDLHTESEQKGSFVFFERWASDEALE 64

Query: 67 EHELTPHFQALVAAVGGIAE-IRIRKLTQIA 96
          +H  T HF+ LV A+ G  E + I+K+ QIA
Sbjct: 65 KHNKTEHFKQLVKAIDGKLESLEIKKVKQIA 95


>NMB1575 [S] COG1359 Uncharacterized conserved protein Nme Neisseria
          meningitidis MC58
          Length = 97

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%)

Query: 7  IVATLTAKPGHGATLKAALEKVVPPSRAEAGCHRYDLHADNENPELFVMLEEWRDATALK 66
          IVA +T KP +  TL A  +++V  SRAE G   YDLH +   P  FV +E W+   A+ 
Sbjct: 6  IVALVTVKPEYTETLAAQFKELVKASRAEEGNISYDLHQEIGKPNRFVFVENWKSQAAID 65

Query: 67 EHELTPHFQALVAAVGGIAE 86
          EH  + HFQA V +V G  E
Sbjct: 66 EHNASAHFQAFVQSVDGKTE 85


>NMA1764 [S] COG1359 Uncharacterized conserved protein NmA Neisseria
          meningitidis Z2491
          Length = 97

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%)

Query: 7  IVATLTAKPGHGATLKAALEKVVPPSRAEAGCHRYDLHADNENPELFVMLEEWRDATALK 66
          IVA +T KP +  TL A  +++V  SRAE G   YDLH +   P  FV +E W+   A+ 
Sbjct: 6  IVALVTVKPEYTETLAAQFKELVKASRAEEGNISYDLHQEIGKPNRFVFVENWKSQAAID 65

Query: 67 EHELTPHFQALVAAVGGIAE 86
          EH  + HFQA V +V G  E
Sbjct: 66 EHNASAHFQAFVQSVDGKTE 85