BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0091.p         (143 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3898 [K] COG2207 AraC-type DNA-binding domain-containing prote...    76   3e-14
SMb21649 [K] COG2207 AraC-type DNA-binding domain-containing pro...    71   7e-13
SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing prot...    69   3e-12
AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing prot...    69   4e-12
mll6442 [K] COG2207 AraC-type DNA-binding domain-containing prot...    68   6e-12

>PA3898 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 293

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 5   SHEDWPVE--RLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPITE 62
           SH + P+E   LA ++ +SE HFAR F+ +FG PPHRY+L RR+ RA  LL  S  P+ E
Sbjct: 199 SHLEQPLELGSLAELAALSEYHFARMFRVSFGLPPHRYVLERRLARARDLLAYSAQPLQE 258

Query: 63  IAFRTGWRSLGTFGRIFREITGDNPGTVR 91
           ++   G+ S   F R FRE  G  PG  R
Sbjct: 259 VSLACGFASPSHFNRRFREAHGATPGQYR 287


>SMb21649 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme
           Sinorhizobium meliloti
          Length = 313

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 6/98 (6%)

Query: 10  PVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALL-RDSELPITEIAFRTG 68
           PVE LA +S +S AHF+RAF  + G PP  ++L +R++RA  LL + ++LP+ E+A  +G
Sbjct: 202 PVEELARISGLSRAHFSRAFAASEGMPPAEFVLQKRLQRAVKLLTKTADLPVKEVAILSG 261

Query: 69  WRSLGTFGRIFREITGDNPGTVRKQARIAAQELSSVPA 106
           +     F ++FR + G +P   R     A     SVPA
Sbjct: 262 FEDPNYFAKVFRRVFGASPTEFRTTGMYA-----SVPA 294


>SMa1822 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme
           Sinorhizobium meliloti
          Length = 364

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 11  VERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPITEIAFRTGWR 70
           VE+LAS  ++S+A F RAF+E  G  PHR+L  +RIE+A  LL+ S+  ++EIA   G+ 
Sbjct: 277 VEQLASACNLSQATFLRAFRETMGKTPHRWLQQQRIEKAVDLLQFSQTQLSEIASVCGFS 336

Query: 71  SLGTFGRIFREITGDNPGTVRKQARIAA 98
               F R F +  G  PG  R+  +++A
Sbjct: 337 DQSHFTRAFVQAMGATPGAWRRSRQLSA 364


>AGc2651 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 252

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%)

Query: 9   WPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPITEIAFRTG 68
           W ++ LA+ + +SE+     F E FG  PHR+L+  R+++   LLR+S LPI EIA R+G
Sbjct: 164 WTIDMLAACASISESRLHALFIEEFGLSPHRWLVGLRMDKVCTLLRESSLPIAEIALRSG 223

Query: 69  WRSLGTFGRIFREITGDNPGTVRKQ 93
           +       R  R   G+ P   R+ 
Sbjct: 224 FSDQTALTRALRNAVGETPAAYRRN 248


>mll6442 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo
           Mesorhizobium loti
          Length = 351

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 10  PVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSE-LPITEIAFRTG 68
           PV  L  +S +S AHF+R F E+ G PP  ++L +R++RAA LL  ++ LP+ E+A   G
Sbjct: 246 PVADLVQISGLSRAHFSRCFAESEGLPPAEFVLQQRLQRAAKLLTKADFLPVKEVAILCG 305

Query: 69  WRSLGTFGRIFREITGDNPGTVRKQARIA 97
           +     F ++FR + G  P   R     A
Sbjct: 306 FEDANYFSKVFRRLYGTTPSQFRTTGMYA 334