BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0046.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li...   149   5e-36
PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik...   135   5e-32
STM2785 [TK] COG0745 Response regulators consisting of a CheY-li...   119   4e-27
AGl1670 [TK] COG0745 Response regulators consisting of a CheY-li...   118   8e-27
HI1708 [TK] COG0745 Response regulators consisting of a CheY-lik...   117   1e-26

>RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 246

 Score =  149 bits (375), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 96/123 (78%), Gaps = 9/123 (7%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQ---------EDYALVLLD 51
           MR+LLVEDD M+GEA RKGLRQDGFA+DWV+DG AA  A+             + L+LLD
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63

Query: 52  LGLPQKNGLAVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSAR 111
           LGLP+++GL V+ E+R  G  +P+LI TARDAVADRVAGL+AGADDYL+KP+DL+EL+AR
Sbjct: 64  LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123

Query: 112 MRA 114
           M A
Sbjct: 124 MHA 126


>PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 221

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 89/114 (78%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILL EDDL++G+  R GLR +G  V+WV DG AA  AL  +++ L++LD+GLP+++GL
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            +L+ LR  G   PVL+ TARD VADRVAGLD+GADDYL KP+DL+EL AR+RA
Sbjct: 61  DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRA 114


>STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sty
           Salmonella typhimurium LT2
          Length = 224

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 79/114 (69%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LL ED+  +     K L Q+GFAVD V DG AA   L  E YAL +LD+ +P  +GL
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            V+Q LR  G  +PVL+ TAR AVADRV GL+ GADDYL KP++LEEL AR+RA
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRA 114


>AGl1670 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 217

 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 98/166 (59%), Gaps = 25/166 (15%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQ---DGAAAALALRQEDYALVLLDLGLPQK 57
           MR+LLVEDD ++GEA R  +   G AVDW +   D  AA L +    Y L+LLD+ LP  
Sbjct: 1   MRVLLVEDDYVLGEALRDHVAAAGHAVDWFKTLGDAMAATLTM---GYGLILLDMRLPDG 57

Query: 58  NGLAVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARM----- 112
            G+ +LQ LR   +  PV+I TA D V+DR+AGL+AGADDY++KP+DL ELSARM     
Sbjct: 58  EGITLLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVSR 117

Query: 113 ----RAXPILDLLESRAASPGGPRRQPYPCSRRQPESGHARSLAAR 154
               R+ P++ L       PG    Q    +R     G A++L+AR
Sbjct: 118 RYEGRSAPVIRL-------PGIEINQ---VARNITVDGTAQTLSAR 153


>HI1708 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Hin
           Haemophilus influenzae
          Length = 221

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 78/114 (68%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILL+EDD ++G   + GL + GFAVDW  DG     AL    Y  V+LDL LP+ +GL
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            VLQ+ R+    VPVLI TARD + +RV GL +GADDYL KP+ L E++AR++A
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQA 114