BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0045.p         (50 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li...    76   2e-14
ygiX [TK] COG0745 Response regulators consisting of a CheY-like ...    71   7e-13
STM3177 [TK] COG0745 Response regulators consisting of a CheY-li...    70   1e-12
PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik...    69   2e-12
RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li...    69   2e-12

>RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 246

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 2   SRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           S AQL++ LYGWD+ V SN +EV+IHALRKKLGS FI+N+RG+GY++P+
Sbjct: 182 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIPR 230


>ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Eco
           Escherichia coli K12
          Length = 219

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGY 46
           LSR  +EEKLY WD+ V SNA+EVH+H LR+KLGSDFI+ V GIGY
Sbjct: 169 LSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214


>STM3177 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Sty
           Salmonella typhimurium LT2
          Length = 219

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGY 46
           L R  +EEKLY WDD V SNA+EVH+H LR+KLGS+FI+ V GIGY
Sbjct: 169 LPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGY 214


>PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 221

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGY 46
           LSR QLE+ LYGW   V+SNAIEVH+H LR+KLG+  I+ VRGIGY
Sbjct: 169 LSRNQLEQSLYGWSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGY 214


>RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 221

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 41/50 (82%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSR +LEE++YGW   V SNA+E  IHALRKKLG++ IKNVRG+G++V K
Sbjct: 170 LSRGELEERIYGWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSK 219