BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0044.p         (195 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1553 [T] COG0642 Signal transduction histidine kinase Rso Ral...   143   2e-34

>RSp1553 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 438

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 2/171 (1%)

Query: 10  AGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLDDEIMMQIWD 69
           AGI+ A + +Y QAR EAN +FDYQM+Q+AA+LP Q   P  P       DD+++++IWD
Sbjct: 18  AGIVAATLLIYAQARQEANALFDYQMQQVAAALPSQWIDPPPPALAGIAHDDDVVIRIWD 77

Query: 70  STGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQSARKQVAAQ 129
            TG  +Y SH+R  +P QAELGF+DV  P G WRVYS   G  V Q++QP SAR +VAA+
Sbjct: 78  DTGRSLYLSHARPDLPTQAELGFSDVVTPEGTWRVYSVAFGPAVVQIAQPYSARHEVAAR 137

Query: 130 AAVKTVMPLLLLFPFLGALIWIAVGHALAPVXRNWPSAPATTKSAARLSPI 180
            A++TV PLL+L P L  L+W+AVG  L+P+     +    T+ AA LSP+
Sbjct: 138 MALRTVAPLLILLPLLAWLVWLAVGRGLSPL--GTVARQVQTRDAAALSPL 186