BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0040.p (410 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA441 [C] COG0372 Citrate synthase Atu Agrobacterium tumefacie... 191 2e-48 AGl71 [C] COG0372 Citrate synthase Atu Agrobacterium tumefaciens... 190 7e-48 CC3643 [C] COG0372 Citrate synthase Ccr Caulobacter vibrioides 180 6e-45 mlr3843 [C] COG0372 Citrate synthase Mlo Mesorhizobium loti 161 2e-39 SA1518 [C] COG0372 Citrate synthase Sau Staphylococcus aureus N315 110 8e-24 >AGpA441 [C] COG0372 Citrate synthase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 425 Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/217 (50%), Positives = 141/217 (64%), Gaps = 5/217 (2%) Query: 112 GSGALMRLLAASLLGTRPSPAPIHEQCAKAWKLDAHGAALVRMALVLCADHELNASSFTA 171 G+ AL+R +A + + ++P +H A AW+ DA GA L+R ALVL ADHELN S+F Sbjct: 208 GAAALLRGIAGACISSQPKTQAVHLSLADAWQTDAAGADLIRRALVLQADHELNTSAFAV 267 Query: 172 RCVASTGTSLRASVIAGLAALTGGKHGGATARVEALLDEIDANGKADIAAGLQRRLARGD 231 R VASTG SL A + AGL+AL+G HGG T+ VE L DE+D G D+ + RL RG+ Sbjct: 268 RVVASTGASLGACLNAGLSALSGPLHGGMTSLVEILFDELDRYG--DVERVIDERLRRGE 325 Query: 232 DLPGFGHHLYPDGDVRANALLAEVLPHHPAWRD-IIAAARNLIGQHPSLDFALVALRRHL 290 +PGF H LYPDGD RA LL + P A RD ++ + GQ P+ D ALV+LRR L Sbjct: 326 AIPGFRHPLYPDGDPRATGLLLYLPPD--AQRDELLQMMNDTTGQLPTCDVALVSLRRSL 383 Query: 291 QLPVGAAFGLFALGRGMGWIAQALEQRASGELIRPXA 327 +LP GAA LFA+ R +GW+A ALEQ+ +LIRP A Sbjct: 384 KLPRGAALALFAVARTVGWVAHALEQKLDDKLIRPRA 420 >AGl71 [C] COG0372 Citrate synthase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 294 Score = 190 bits (482), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 109/217 (50%), Positives = 141/217 (64%), Gaps = 5/217 (2%) Query: 112 GSGALMRLLAASLLGTRPSPAPIHEQCAKAWKLDAHGAALVRMALVLCADHELNASSFTA 171 G+ AL+R +A + + ++P +H A AW+ DA GA L+R ALVL ADHELN S+F Sbjct: 77 GAAALLRGIAGACISSQPKTQAVHLSLADAWQTDAAGADLIRRALVLQADHELNTSAFAV 136 Query: 172 RCVASTGTSLRASVIAGLAALTGGKHGGATARVEALLDEIDANGKADIAAGLQRRLARGD 231 R VASTG SL A + AGL+AL+G HGG T+ VE L DE+D G D+ + RL RG+ Sbjct: 137 RVVASTGASLGACLNAGLSALSGPLHGGMTSLVEILFDELDRYG--DVERVIDERLRRGE 194 Query: 232 DLPGFGHHLYPDGDVRANALLAEVLPHHPAWRD-IIAAARNLIGQHPSLDFALVALRRHL 290 +PGF H LYPDGD RA LL + P A RD ++ + GQ P+ D ALV+LRR L Sbjct: 195 AIPGFRHPLYPDGDPRATGLLLYLPPD--AQRDELLQMMNDTTGQLPTCDVALVSLRRSL 252 Query: 291 QLPVGAAFGLFALGRGMGWIAQALEQRASGELIRPXA 327 +LP GAA LFA+ R +GW+A ALEQ+ +LIRP A Sbjct: 253 KLPRGAALALFAVARTVGWVAHALEQKLDDKLIRPRA 289 >CC3643 [C] COG0372 Citrate synthase Ccr Caulobacter vibrioides Length = 388 Score = 180 bits (456), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/195 (54%), Positives = 124/195 (63%), Gaps = 4/195 (2%) Query: 133 PIHEQCAKAWKLDAHGAALVRMALVLCADHELNASSFTARCVASTGTSLRASVIAGLAAL 192 P H++ A AW L A GA LVR ALVL ADHELNAS+F AR ASTG SL A+ +AGL+AL Sbjct: 180 PAHQRFAHAWNLTADGADLVRRALVLMADHELNASTFAARVAASTGASLSAACLAGLSAL 239 Query: 193 TGGKHGGATARVEALLDEIDANGKADIAAGLQRRLARGDDLPGFGHHLYPDGDVRANALL 252 +G HGG ARVEAL++E D + D A + RL +G LPGF H LYP GD RA ALL Sbjct: 240 SGPLHGGMAARVEALVEEAD---RRDAARAVSSRLEQGASLPGFDHPLYPGGDPRAAALL 296 Query: 253 AEVLPHHPAWRDIIAAARNLIGQHPSLDFALVALRRHLQLPVGAAFGLFALGRGMGWIAQ 312 A P P + A R G P++DFALVAL R L LP A F LFA R GW A Sbjct: 297 ARFEPPEP-LTALWQATRAATGLAPNIDFALVALARGLALPQDAPFILFATARSAGWTAH 355 Query: 313 ALEQRASGELIRPXA 327 A+EQ +G LIRP A Sbjct: 356 AIEQLQTGRLIRPRA 370 >mlr3843 [C] COG0372 Citrate synthase Mlo Mesorhizobium loti Length = 379 Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/204 (48%), Positives = 123/204 (60%), Gaps = 4/204 (1%) Query: 122 ASLLGTRPSPAPIHEQCAKAWKLDAHGAALVRMALVLCADHELNASSFTARCVASTGTSL 181 A LG P P+H + A+ W +D GA +R ALVL ADHELNAS+F AR ASTG S Sbjct: 171 AGALGAEAGPDPVHRRLARGWSVDDAGADAIRRALVLLADHELNASTFAARVAASTGASP 230 Query: 182 RASVIAGLAALTGGKHGGATARVEALLDEIDANGKADIAAGLQRRLARGDDLPGFGHHLY 241 A ++AGLA L+G +HGGA V L ++ +G AD A ++R L LP FGH LY Sbjct: 231 AACLLAGLATLSGPRHGGAGEAVMQLAEDAARHG-AD--AAIRRWLGHDRPLPAFGHPLY 287 Query: 242 PDGDVRANALLAEVLPHHPAWRDIIAAARNLIGQHPSLDFALVALRRHLQLPVGAAFGLF 301 PDGD R AL A + P + + AA + G P++DFAL AL R L LP A F LF Sbjct: 288 PDGDPRTTALSAAI-PVDETLQQLEKAAIAMTGARPNIDFALAALTRGLGLPRDAPFQLF 346 Query: 302 ALGRGMGWIAQALEQRASGELIRP 325 ALGR +GW A +EQ SG +IRP Sbjct: 347 ALGRSVGWAAHMVEQIVSGSIIRP 370 >SA1518 [C] COG0372 Citrate synthase Sau Staphylococcus aureus N315 Length = 373 Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 17/185 (9%) Query: 155 ALVLCADHELNASSFTARCVASTGTSLRASVIAGLAALTGGKHGGATARVEALLDEIDAN 214 AL+L ADHELNAS+FTARC S+ + + + ++A + +L G HGGA +V +L EI + Sbjct: 177 ALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSI 236 Query: 215 GKADIAAGLQRRLARGDDLPGFGHHLYPDGDVRANAL------------LAEVLPHHPAW 262 D A L + A D + GFGH +Y DGD RA L E+ Sbjct: 237 ENVD--AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKM 294 Query: 263 RDIIAAARNLIGQHPSLDFALVALRRHLQLPVGAAFGLFALGRGMGWIAQALEQRASGEL 322 +A + LI P++DF ++ +++P +FA+ R GWIA LEQ + Sbjct: 295 EKRMAEEKGLI---PNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRI 351 Query: 323 IRPXA 327 +RP A Sbjct: 352 MRPRA 356