BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0035.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 352 4e-97 ylcA [TK] COG0745 Response regulators consisting of a CheY-like ... 320 1e-87 ZylcA [TK] COG0745 Response regulators consisting of a CheY-like... 320 1e-87 ECs0609 [TK] COG0745 Response regulators consisting of a CheY-li... 320 1e-87 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 299 4e-81 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 174/225 (77%), Positives = 200/225 (88%) Query: 1 MKLLVVEDEPKTGEYIQRGLSEAGFIVDLAKNGLDGYHLAMTEPYDLIVLDVMLPDVDGW 60 MKLLVVEDE KTGEY+Q+GL+EAGF+VDLA+NG+DG HLA YDL+VLDVMLPD+DGW Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 RIVQSLREAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 ++VQSLR A VPVLFLTARDSV DRVKGLE+GADDYLVKPFAF+ELLARVRTLLRRGS Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 121 SAVLQDRLTVADLVLDLPRRTASRGGRKLVLTNKEFALLEFLARRRGEVLPRSLIASQIW 180 + V DR+ +ADLVLDL RR ASR G+++ LT+KEFALLE LARRRGEVLPRSLIASQ+W Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 181 DINFNSDTNVIDVAIRRLRAKVDDGFDEKLILTVRGVGYILDVPE 225 D+NF+SDTNVIDVAIRRLRAK+DD F KLI TVRG+GY+L+ PE Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLEDPE 225 >ylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 227 Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/225 (66%), Positives = 190/225 (84%) Query: 1 MKLLVVEDEPKTGEYIQRGLSEAGFIVDLAKNGLDGYHLAMTEPYDLIVLDVMLPDVDGW 60 MKLL+VEDE KTGEY+ +GL+EAGF+VDLA NGL+GYHLAMT YDLI+LD+MLPDV+GW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 RIVQSLREAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 IV+ LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 SAVLQDRLTVADLVLDLPRRTASRGGRKLVLTNKEFALLEFLARRRGEVLPRSLIASQIW 180 + +++ + VADL++DL R +R G ++ LT+KEF LLEF R +GEVLPRSLIASQ+W Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 181 DINFNSDTNVIDVAIRRLRAKVDDGFDEKLILTVRGVGYILDVPE 225 D+NF+SDTN IDVA++RLR K+D+ F+ KLI TVRGVGY+L+VP+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 >ZylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 227 Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/225 (66%), Positives = 190/225 (84%) Query: 1 MKLLVVEDEPKTGEYIQRGLSEAGFIVDLAKNGLDGYHLAMTEPYDLIVLDVMLPDVDGW 60 MKLL+VEDE KTGEY+ +GL+EAGF+VDLA NGL+GYHLAMT YDLI+LD+MLPDV+GW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 RIVQSLREAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 IV+ LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 SAVLQDRLTVADLVLDLPRRTASRGGRKLVLTNKEFALLEFLARRRGEVLPRSLIASQIW 180 + +++ + VADL++DL R +R G ++ LT+KEF LLEF R +GEVLPRSLIASQ+W Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 181 DINFNSDTNVIDVAIRRLRAKVDDGFDEKLILTVRGVGYILDVPE 225 D+NF+SDTN IDVA++RLR K+D+ F+ KLI TVRGVGY+L+VP+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 >ECs0609 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 227 Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/225 (66%), Positives = 190/225 (84%) Query: 1 MKLLVVEDEPKTGEYIQRGLSEAGFIVDLAKNGLDGYHLAMTEPYDLIVLDVMLPDVDGW 60 MKLL+VEDE KTGEY+ +GL+EAGF+VDLA NGL+GYHLAMT YDLI+LD+MLPDV+GW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 RIVQSLREAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 IV+ LR A K +P+L LTA ++ RVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 SAVLQDRLTVADLVLDLPRRTASRGGRKLVLTNKEFALLEFLARRRGEVLPRSLIASQIW 180 + +++ + VADL++DL R +R G ++ LT+KEF LLEF R +GEVLPRSLIASQ+W Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 181 DINFNSDTNVIDVAIRRLRAKVDDGFDEKLILTVRGVGYILDVPE 225 D+NF+SDTN IDVA++RLR K+D+ F+ KLI TVRGVGY+L+VP+ Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 299 bits (765), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 149/222 (67%), Positives = 186/222 (83%) Query: 1 MKLLVVEDEPKTGEYIQRGLSEAGFIVDLAKNGLDGYHLAMTEPYDLIVLDVMLPDVDGW 60 MKLL+VEDEP+ G+Y+++GL+EAGF VDL+ +G +G LA+ YDL++LDVMLP DGW Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 RIVQSLREAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 +I++S+R+A TVPVLFLTARD+V DRV+GLE GADDYLVKPFAF ELLARVRTLLRRGS Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 121 SAVLQDRLTVADLVLDLPRRTASRGGRKLVLTNKEFALLEFLARRRGEVLPRSLIASQIW 180 + + L +ADL LDL RR R G+++ LT KEFALLE L RR GEVLP+SLIASQ+W Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 181 DINFNSDTNVIDVAIRRLRAKVDDGFDEKLILTVRGVGYILD 222 D+NF+SDTNVI+VAIRRLRAKVDD + ++LI TVRG+GY+L+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLE 222