BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0029.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0753 Non COG                                                        74   7e-14
PA1323 [S] COG4575 Uncharacterized conserved protein Pae Pseudom...    62   2e-10

>RSc0753 Non COG
          Length = 108

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 54/75 (72%)

Query: 1  MKTLVKDAQELFREAAAATGDKADELRSKGLIMLEAAVEAAQNAQAVAIEKGKEVAAATD 60
          +KT++ DA+ L ++AA+ +G+KA ELR +G+ +L  A E AQ+ Q   + K K  A ATD
Sbjct: 21 VKTVLSDAEALLKQAASTSGEKAAELRERGMGLLRQAKEKAQDLQDAVVTKSKAAARATD 80

Query: 61 DYVHENPWRAVAISA 75
          DYVH++PW+AV ++A
Sbjct: 81 DYVHDHPWQAVGVAA 95


>PA1323 [S] COG4575 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 110

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 1   MKTLVKDAQELFREAAAATGDKADELRSKGLIMLEAAVEAAQNAQAVAIEKGKEVAAATD 60
           ++ L+ +A  +  ++AA  GDKAD  R++   +LE A +A     +   E+ +    AT+
Sbjct: 22  LQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAERSRHAVDATE 81

Query: 61  DYVHENPWRAVAISAGVGLLVGLVIGR 87
            Y+  NPW+ VAI+  VGLL G ++GR
Sbjct: 82  SYIGANPWQTVAITTAVGLLAGFLLGR 108