BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0023.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3084 [C] COG3245 Cytochrome c5 Rso Ralstonia solanacearum           59   3e-09

>RSc3084 [C] COG3245 Cytochrome c5 Rso Ralstonia solanacearum
          Length = 294

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 1  MSDAHNEHHESAIKTPKQLIAAVSAGFLIPIVCIVLLVEYVTNGQTTGAGSA 52
          MSDA ++ HE  IKTPKQLI AV A F +PI+ I+LL  YV  G   GAGS+
Sbjct: 1  MSDAQHDEHEPLIKTPKQLIIAVIAAFAVPILVIILLANYVGLGVKEGAGSS 52