BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0005.p         (260 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0114 [S] COG4705 Uncharacterized membrane-anchored protein co...   291   1e-78
mlr4456 Non COG                                                       234   2e-61
all7626 [S] COG4705 Uncharacterized membrane-anchored protein co...   163   4e-40
RSc3405 [S] COG4705 Uncharacterized membrane-anchored protein co...   121   1e-27

>RSp0114 [S] COG4705 Uncharacterized membrane-anchored protein conserved in
           bacteria Rso Ralstonia solanacearum
          Length = 260

 Score =  291 bits (745), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/248 (64%), Positives = 182/248 (73%), Gaps = 5/248 (2%)

Query: 1   MRQLPASRVAELINKVPEVTLSFWIIKILSTTVGETVADFLAVGVGWGQGLTSAVMVVFL 60
           MR LP +     +NKVP+V L FWIIKILSTTVGET ADFLAV VG G  +T   M   L
Sbjct: 6   MRALPGA-----LNKVPQVALGFWIIKILSTTVGETGADFLAVNVGLGTAITGGAMAALL 60

Query: 61  ALVLFNQVRMRGHEPWSYWLTVVLVSVVGTQITDLLTDGVGVSLYWSTTVFAVVLAAIFT 120
              L  Q+R R + PW YWLTVVLVS+VGTQITDLLTD +GVSLY ST VF+V L AIF 
Sbjct: 61  LAALGAQLRARRYVPWLYWLTVVLVSIVGTQITDLLTDRLGVSLYVSTAVFSVALLAIFA 120

Query: 121 VWYMIERTLSIHDVVTRSRESFYWLAILCTFALGTAAGDLATEALELGFSWGAIIFGTLI 180
           +WY  ERTLSI  + TR RE FYW AILCTFALGTAAGDLATEA+ LGF  G ++FG LI
Sbjct: 121 IWYRTERTLSIQAIDTRRRELFYWAAILCTFALGTAAGDLATEAIGLGFQRGIVVFGMLI 180

Query: 181 ALTYLSWRMGGNAVLTFWIAYILTRPFGAALGDLLTQSKTYGGFGMGAMWTSILFLSVIV 240
           AL   ++R+G + VL FW AYILTRP GAALGD L+QS  YGG G+GAM TS +FL+VI 
Sbjct: 181 ALAAAAYRLGADKVLAFWAAYILTRPLGAALGDFLSQSPAYGGAGLGAMVTSAVFLAVIA 240

Query: 241 LFVVIAQR 248
           + V  AQR
Sbjct: 241 VLVAFAQR 248


>mlr4456 Non COG
          Length = 309

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 163/243 (67%), Gaps = 1/243 (0%)

Query: 14  NKVPEVTLSFWIIKILSTTVGETVADFLAVGVGWGQGLTSAVMVVFLALVLFNQVRMRGH 73
           N+VPEVTL FW+IK+++ T+GET AD+LAV +G G  +TS +M   L + L  Q   + +
Sbjct: 59  NRVPEVTLDFWLIKLMAVTMGETAADYLAVNLGLGLTVTSLIMTGVLIVALGLQFAQKRY 118

Query: 74  EPWSYWLTVVLVSVVGTQITDLLTDGVGVSLYWSTTVFAVVLAAIFTVWYMIERTLSIHD 133
            PW+YWL VVL+SVVGT ITD L D  GV L  +T  F+V LAA F VWY  ERTLSIH 
Sbjct: 119 VPWAYWLAVVLISVVGTLITDNLVDTFGVRLQTTTIAFSVALAATFAVWYASERTLSIHT 178

Query: 134 VVTRSRESFYWLAILCTFALGTAAGDLATEALELGFSWGAIIFGTLIALTYLSWRM-GGN 192
           + T  RE FYWLAIL TF+LGTAAGDL  E+ ++G+    ++FG +IAL  L++ +   +
Sbjct: 179 IFTTRREIFYWLAILFTFSLGTAAGDLVAESFDMGYLTSGLMFGGVIALIALAYYLIHLD 238

Query: 193 AVLTFWIAYILTRPFGAALGDLLTQSKTYGGFGMGAMWTSILFLSVIVLFVVIAQRGKAG 252
           A+L FW+AYILTRP GA+ GDLL+Q   YGG G G  +TS++FL  I   V+     +  
Sbjct: 239 AILAFWLAYILTRPLGASFGDLLSQPLEYGGLGFGTTFTSLIFLGCIAALVLYMTLKRTA 298

Query: 253 HQA 255
             A
Sbjct: 299 DDA 301


>all7626 [S] COG4705 Uncharacterized membrane-anchored protein conserved in
           bacteria Nos Nostoc sp. PCC 7120
          Length = 258

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/253 (35%), Positives = 148/253 (58%), Gaps = 9/253 (3%)

Query: 7   SRVAELINKVPEVTLSFWIIKILSTTVGETVADFLAVGVGWGQGLTSAVMVVFLALVLFN 66
            ++  ++NKV +VT+ FWI+KI++TT+GET  DF+++ +G G  +  AV    LA++LF 
Sbjct: 6   QQIGAIMNKVAKVTIFFWIMKIIATTLGETAGDFISMSLGLGYYIAFAVTFAILAILLFF 65

Query: 67  QVRMRGHEPWSYWLTVVLVSVVGTQITDLLTDGVGVSLYWSTTVFAVVLAAIFTVWYMIE 126
           Q++   + P  YWL ++  +  GT+++DL+   +G+     + +    L ++  +WY  +
Sbjct: 66  QIQSDRYRPALYWLAIIATTTAGTEVSDLMDRSLGLGYAMGSLILVASLLSVLAIWYYRD 125

Query: 127 RTLSIHDVVTRSRESFYWLAILCTFALGTAAGDLATEALELGFSWGAI----IFGTLIAL 182
           R LS++ +V +  E+ YWLAI+ + +LGTA GD  T  L L +  GA     + G +IAL
Sbjct: 126 RDLSVYPIVRKDAETTYWLAIVFSNSLGTAFGDFLTSNLGLSYIQGAFVTASVIGVVIAL 185

Query: 183 TYLSWRMGGNAVLTFWIAYILTRPFGAALGDLLTQSKTYGGFGMGAMWTSIL--FLSVIV 240
            Y++     N VL FW+A+I TRPFGA  GD LT+    GG  +   + S++   L  +V
Sbjct: 186 HYVTKL---NDVLLFWLAFIFTRPFGATFGDFLTKPIKDGGLSLPRGYASVIAFILLAVV 242

Query: 241 LFVVIAQRGKAGH 253
           LF  + +  K  +
Sbjct: 243 LFFSVRKEKKVRY 255


>RSc3405 [S] COG4705 Uncharacterized membrane-anchored protein conserved in
           bacteria Rso Ralstonia solanacearum
          Length = 261

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 125/215 (58%), Gaps = 1/215 (0%)

Query: 14  NKVPEVTLSFWIIKILSTTVGETVADFLAVGVGWGQGLTSAVMVVFLALVLFNQVRMRGH 73
           +K+PE+TL+FWI+KI +TT+GET  D L++ +  G   +S ++V    + L  Q+R R +
Sbjct: 16  SKLPEITLAFWIMKICATTLGETAGDLLSMTLKIGYAASSVLLVGLFLVTLGAQLRSRAY 75

Query: 74  EPWSYWLTVVLVSVVGTQITDLLTDGVGVSLYWSTTVFAVVLAAIFTVWYMIERTLSIHD 133
            P  YW  ++  S  GT ++D +   +G+     + + A +L A+   W +  ++LSI  
Sbjct: 76  HPLLYWTVILSTSTAGTTLSDFMDRTLGLGYATGSAILAGLLGAVLLYWKLSRKSLSIAR 135

Query: 134 VVTRSRESFYWLAILCTFALGTAAGDLATEALELGFSWGAIIFGTLIALTYLSWRMGG-N 192
           V     E  YW AIL +  LGTA GD   ++  LGF+ GA++   +IAL   ++   G +
Sbjct: 136 VRGGQGELLYWGAILVSNTLGTALGDFLADSSGLGFAGGALLIAGIIALIAAAYYFTGLS 195

Query: 193 AVLTFWIAYILTRPFGAALGDLLTQSKTYGGFGMG 227
            V  FW+A++LTRP GA  GDLLT+  + GG  +G
Sbjct: 196 RVALFWMAFVLTRPLGATAGDLLTKPVSAGGLNLG 230