BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0088.p (269 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0705 [G] COG3734 2-keto-3-deoxy-galactonokinase Sme Sinorhizo... 142 1e-33 AGpA669 [G] COG3734 2-keto-3-deoxy-galactonokinase Atu Agrobacte... 125 1e-28 SMc00881 [G] COG3734 2-keto-3-deoxy-galactonokinase Sme Sinorhiz... 117 4e-26 AGc1271 [G] COG3734 2-keto-3-deoxy-galactonokinase Atu Agrobacte... 113 5e-25 mlr4742 [G] COG3734 2-keto-3-deoxy-galactonokinase Mlo Mesorhizo... 112 1e-24 >SMa0705 [G] COG3734 2-keto-3-deoxy-galactonokinase Sme Sinorhizobium meliloti Length = 324 Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 135/258 (52%), Gaps = 31/258 (12%) Query: 14 IALDWGTTSLRAYRFDADGRVADRRALPWGVMNLPPAEDGAGASANSANSADAGFRRALQ 73 + LDWGTT RA+ +DG + D++ G+ ++ E G R + Sbjct: 22 VVLDWGTTGFRAFLVRSDGSLVDQKEGERGIQSIAKGEHG----------------RVVS 65 Query: 74 AACGDWLRDSPATPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVDTGFGVPLHIV 133 A W ++AAGM+GS+ GW E PY+ P + ++V G + + Sbjct: 66 EALASWRAGYGPLDIVAAGMIGSRNGWIEMPYVPTPASAADVAAAARTEGLPEGNRITFL 125 Query: 134 PGLLQRSALP--NVMRGEETQVAGI-LDQLQVDDILIGLPGTHSKWVHVRGKRIEHFDTF 190 PGL + P +VMRGEE Q+ G LD+ DI++ LPGTH+KW +RG IE F TF Sbjct: 126 PGLTDPTGFPFPDVMRGEEAQLVGFGLDR----DIIVVLPGTHAKWAEIRGGHIERFRTF 181 Query: 191 MTGEMYAVLSNHSILGR--TMQRDGAVDATDDAAFVRGALVAKSSDGRA-GMLSNIFSSR 247 +TGE+YA L++HS L + T +RD A D AF G +A+ RA G+L+ +F+ R Sbjct: 182 VTGEIYATLADHSFLSKVATAERDHAAD-----AFAEGVALAQEESTRAGGLLTRLFAVR 236 Query: 248 TLGLTGELSPRRARRRIT 265 T L G ++P + R++ Sbjct: 237 TGWLAGAIAPDEMKSRLS 254 >AGpA669 [G] COG3734 2-keto-3-deoxy-galactonokinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 325 Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 129/265 (48%), Gaps = 35/265 (13%) Query: 4 ATPSTSSTGLIALDWGTTSLRAYRFDADGRVADRRALPWGVMNLPPAEDGAGASANSANS 63 A+P+TS I +DWGTTSLRA G D G+ +L + Sbjct: 24 ASPATS----IIVDWGTTSLRATLVGESGEELDYLETTDGISSLGKDQ------------ 67 Query: 64 ADAGFRRALQAACGDWLRDSPATPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVD 123 AL A W A P+ A GM+ S+ GW E PY+ P +E+ Sbjct: 68 ----HEPALMTALAPWFSSLGALPVAALGMITSRNGWVEVPYVQCPAGPAELAAGTVRRS 123 Query: 124 TGFGVPLHIVPGLLQ--RSALPNVMRGEETQVAGI-LDQLQVDDILIGLPGTHSKWVHVR 180 G L +PGL R P+VMRGEETQV G LD+ DI I +PGTHSKW V+ Sbjct: 124 LPNGSELVFLPGLQDPLRRPFPDVMRGEETQVIGHGLDK----DITIIIPGTHSKWARVK 179 Query: 181 GKRIEHFDTFMTGEMYAVLSNHSILGRTMQRDGAVDATDDA-AFVRGALVAKSSDGRAGM 239 +I+ F TF+TGE++ +L NHS + R + A DDA A++ G AK S M Sbjct: 180 AGKIDCFQTFVTGEIFNLLINHSFIARGSTQ----PAVDDADAYLWGLHEAKQS---TAM 232 Query: 240 LSNIFSSRTLGLTGELSPRRARRRI 264 S +FS+RT L G+LS + R + Sbjct: 233 SSLLFSARTGTLAGKLSADQLRSFV 257 >SMc00881 [G] COG3734 2-keto-3-deoxy-galactonokinase Sme Sinorhizobium meliloti Length = 306 Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 23/194 (11%) Query: 15 ALDWGTTSLRAYRFDADGRV-ADRRALPWGVMNLPPAEDGAGASANSANSADAGFRRALQ 73 A+DWGT+S R + DG V A+RR+ + +A GF L Sbjct: 9 AVDWGTSSFRLWIIGEDGAVLAERRS-----------------AEGMTTAAKTGFHTILD 51 Query: 74 AACGDWLRDSPA-TPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVDTGFGVPLHI 132 +PA P+I GM G++QGW+EA Y++ P A++E+ T + + I Sbjct: 52 GHLA--AVSAPAHLPIIICGMAGARQGWKEAGYIETPAALAEIAGRATAIPD-VDRDIRI 108 Query: 133 VPGLLQRSA-LPNVMRGEETQVAGILDQLQVDDILIGLPGTHSKWVHVRGKRIEHFDTFM 191 +PGL QR P+VMRGEETQ+ G L L+ +PGTHSKWV + R+E F TFM Sbjct: 109 LPGLAQRDRRHPDVMRGEETQLLGAAAHLGAGSHLVCMPGTHSKWVRLADDRVEGFSTFM 168 Query: 192 TGEMYAVLSNHSIL 205 TGE++ ++ H+IL Sbjct: 169 TGELFDTIARHTIL 182 >AGc1271 [G] COG3734 2-keto-3-deoxy-galactonokinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 329 Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 109/221 (49%), Gaps = 33/221 (14%) Query: 9 SSTGLIALDWGTTSLRAYRFDADGRV-ADRRALPWGVMNLPPAEDGAGASANSANSA-DA 66 S IA+DWGTTS R + G V A+RR SA +A Sbjct: 27 SEPAFIAVDWGTTSFRLWLLSRSGAVLAERR------------------SAEGMTTAMRT 68 Query: 67 GFRRALQAACGDWLRDSPATPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVDTGF 126 GF LQA D + P++ GM G++QGW EA Y+DVP ++S V ++ Sbjct: 69 GFADVLQAHL-DAIGAPADLPVLVCGMAGARQGWVEAGYIDVPASLSAV------LEGAV 121 Query: 127 GVP-----LHIVPGLLQR-SALPNVMRGEETQVAGILDQLQVDDILIGLPGTHSKWVHVR 180 VP + I+PGL QR P+VMRGEETQ+ G L + L+ +PGTHSKWV V+ Sbjct: 122 RVPGQTRDVRILPGLAQRDKGAPDVMRGEETQLLGALSSGDSGEKLVCMPGTHSKWVTVK 181 Query: 181 GKRIEHFDTFMTGEMYAVLSNHSILGRTMQRDGAVDATDDA 221 + F TFMTGE++ +S +IL + A +A Sbjct: 182 DGGVTRFATFMTGELFEAISKQTILSHAVAEAEAFTGEHEA 222 >mlr4742 [G] COG3734 2-keto-3-deoxy-galactonokinase Mlo Mesorhizobium loti Length = 646 Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 130/254 (51%), Gaps = 32/254 (12%) Query: 9 SSTGLIALDWGTTSLRAYRFDADGRV-ADRRALPWGVMNLPPAEDGAGASANSANSADAG 67 ++ + ALDWGTT LRA+ D G++ A+RR +DG + + G Sbjct: 335 NAPAVAALDWGTTRLRAWLIDGSGKLLAERRG-----------DDGL------ITAREKG 377 Query: 68 FRRALQ---AACGDWLRDSP-ATPLIAAGMVGSKQGWREAPYLDVPLAVSEVGNTMTIVD 123 F L+ AA G +P P+I GM GS+QGW EAPY+ VP + + ++ Sbjct: 378 FSHVLEGHLAAMG-----APDGLPIIICGMAGSRQGWIEAPYVTVPAPIGAILRGAARIE 432 Query: 124 TGFGVPLHIVPGLLQRSA-LPNVMRGEETQVAGILDQLQVDDILIGLPGTHSKWVHVRGK 182 G + IVPGL QR A P+VMRGEETQ+AG + + +PGTHSKWV V Sbjct: 433 -GERRDIRIVPGLAQRLADAPDVMRGEETQLAGAGLPAKGRHLAC-MPGTHSKWVVVEDG 490 Query: 183 RIEHFDTFMTGEMYAVLSNHSILGRTMQRDGAVDATDDAAFVRGALVAKSSDGRAGMLSN 242 + F T+ TGE+++VL+ HSIL ++ A A D+ F + A G + S Sbjct: 491 AVAGFGTWPTGELFSVLAGHSILRHSLGEHPAPVAADNPFFRQWCERALGEGG--DVTSK 548 Query: 243 IFSSRTLGLTGELS 256 +F+ R GL +L Sbjct: 549 LFAIRAAGLLQDLK 562