BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0083.p (364 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 296 4e-80 AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 288 1e-77 SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 264 2e-70 ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 247 3e-65 ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 247 3e-65 >YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 339 Score = 296 bits (759), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 173/323 (53%), Positives = 223/323 (69%), Gaps = 13/323 (4%) Query: 37 GALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALGMTLVIATRGIDIS 96 GALAV+LLID + P FF I ++DG L+GS+IDI+NR AP+ L ALGMTLVIAT GID+S Sbjct: 27 GALAVILLIDSLVAPHFFSIHIQDGRLFGSIIDILNRGAPVALLALGMTLVIATGGIDLS 86 Query: 97 VGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAALGVALLCGAWNGLLVATL 156 VGAV+AI+G AA L + P LA +L V LCG WNG LVA L Sbjct: 87 VGAVMAIAGATAATLTS-------------AGYPFMTVLALSLAVGALCGLWNGFLVAVL 133 Query: 157 GLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMFVVL 216 +QPI+ATL+LMVAGRG+AQL+T+GQI+T LGS L LP S+ I M +++ Sbjct: 134 QIQPIVATLMLMVAGRGIAQLITEGQIVTFDSGGLATLGSSTLMYLPMSVVIACSMLILV 193 Query: 217 ALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCSLCAGLAGLMISANIKSAD 276 LL RKTALGLFI+SVGIN ++R AG+ T ++ VY+ C +CA +AG++++A+I+ AD Sbjct: 194 WLLTRKTALGLFIESVGINLRSARNAGVSTRLVLIAVYVICGVCAAVAGIIVTADIRGAD 253 Query: 277 ANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTIYSLGVPPEVNMVV 336 ANNAGL LELDAILAV +GG SL GG+F+L+ SVIGALIIQ + I G PE N+V+ Sbjct: 254 ANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVIGALIIQGMNTGILLSGYQPEFNLVL 313 Query: 337 KSVVVFLVCLSQSPEFRRLRLFK 359 K++VV V + QSP LF+ Sbjct: 314 KAIVVLAVLVVQSPMISLSHLFQ 336 >AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 348 Score = 288 bits (738), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/332 (50%), Positives = 228/332 (68%), Gaps = 18/332 (5%) Query: 19 AAVNRLRRAFFHPLSRPLGALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLM 78 A RL+R L+ L AL ++L + PGF + +++G LYGS+IDI+ RAAP+ Sbjct: 4 AVTRRLKR-----LAPQLAALFIILAAITIISPGFLDVSLQNGRLYGSLIDILVRAAPVA 58 Query: 79 LAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAA 138 L +GMTLVIAT+GID+S+GAV+AI G +AA LI +NG +IP A++ A Sbjct: 59 LLTIGMTLVIATKGIDLSIGAVIAICGAVAATLI------SNG-----HSIPAVLAVSLA 107 Query: 139 LGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGY 198 +G+A CG WNG+LVA L +QPIIATLILMVAGRG+AQL+T+G I+T F +GSG Sbjct: 108 VGIA--CGLWNGVLVALLDIQPIIATLILMVAGRGIAQLITEGVILTFNDDGFAAIGSGS 165 Query: 199 LWGLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCS 258 G+P + I +V+ +L+RK+ALG I++ GIN A+ LAG+R L+FFVY Sbjct: 166 FAGVPLPVIIWVAAALVIGVLVRKSALGFLIEATGINRRAAALAGVRARFLLFFVYAVSG 225 Query: 259 LCAGLAGLMISANIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQA 318 LCA +AG++++A+I+ ADANNAGL LELDAILAV +GGTSL GG+FS+ S+IGALIIQ Sbjct: 226 LCAAIAGMIVTADIRGADANNAGLWLELDAILAVVIGGTSLNGGRFSITASLIGALIIQT 285 Query: 319 LTYTIYSLGVPPEVNMVVKSVVVFLVCLSQSP 350 + I G PPE N+++K+ ++ +V QSP Sbjct: 286 INTGILVSGFPPEFNLIIKAGIIMVVLTLQSP 317 >SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 341 Score = 264 bits (675), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 159/328 (48%), Positives = 225/328 (68%), Gaps = 13/328 (3%) Query: 26 RAFFHPLSRPLGALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALGMT 85 R + L L ALA +++ + PGF +++++G LYGS++DI+NR AP++L A+GMT Sbjct: 6 RTYAGRLLPQLIALAAIVVAISIVFPGFLNLQIQNGRLYGSMVDILNRGAPVVLLAIGMT 65 Query: 86 LVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAALGVALLC 145 +VIAT+GID+SVGAV+AI G +AA LI S + L A L V ++C Sbjct: 66 VVIATKGIDLSVGAVMAICGAVAASLI-------------TSGHSLAETLLATLAVGIVC 112 Query: 146 GAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLPFS 205 G WNG+LVA L +QPIIATL+LMVAGRG+AQL+T+G I+T ++GSG GLP Sbjct: 113 GIWNGVLVAVLDIQPIIATLVLMVAGRGIAQLITEGTILTFNDPGLIFIGSGSFAGLPMP 172 Query: 206 LFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCSLCAGLAG 265 L I +++ALL+R+TALG+ I+++GIN AS L+G+ T L+ Y+ LCA +AG Sbjct: 173 LVIWLVFGLLVALLVRRTALGMLIEAIGINRQASTLSGVLTPVLLVAAYVLSGLCAAIAG 232 Query: 266 LMISANIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTIYS 325 ++ +A+I+ ADANNAGL LELDAILAV +GGTSL GG+FS+ SV+GA+IIQA+ I Sbjct: 233 IIAAADIRGADANNAGLWLELDAILAVVVGGTSLLGGRFSIAASVLGAVIIQAINTGILL 292 Query: 326 LGVPPEVNMVVKSVVVFLVCLSQSPEFR 353 G PPE N+++K+ ++ + + QSP FR Sbjct: 293 SGFPPEFNLIIKAAIIIFILVLQSPRFR 320 >ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 341 Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 211/303 (69%), Gaps = 15/303 (4%) Query: 51 PGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALGMTLVIATRGIDISVGAVVAISG-TIAA 109 P F+++ ++DG L+GS IDI+NRAAP+ L A+GMTLVIAT GID+SVGAV+AI+G T AA Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 110 MLIGGTMVVNNGVPEYVSNIPMGWALAAALGVALLCGAWNGLLVATLGLQPIIATLILMV 169 M + G ++P+ L +ALG +L G WNG+LVA L +QP +ATLILMV Sbjct: 100 MTVAGF------------SLPI--VLLSALGTGILAGLWNGILVAILKIQPFVATLILMV 145 Query: 170 AGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMFVVLALLMRKTALGLFI 229 AGRG+AQL+T GQIIT + GSG L LP + I ++ LL RKTALG+FI Sbjct: 146 AGRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFI 205 Query: 230 QSVGINPVASRLAGIRTAALIFFVYIFCSLCAGLAGLMISANIKSADANNAGLLLELDAI 289 ++VGIN A++ AG+ T ++ Y+ LCA +AG++++A+I+ ADANNAGL LELDAI Sbjct: 206 EAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAI 265 Query: 290 LAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTIYSLGVPPEVNMVVKSVVVFLVCLSQS 349 LAV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK+VVV V + QS Sbjct: 266 LAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQS 325 Query: 350 PEF 352 F Sbjct: 326 QRF 328 >ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ecs Escherichia coli O157:H7 Length = 341 Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 211/303 (69%), Gaps = 15/303 (4%) Query: 51 PGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALGMTLVIATRGIDISVGAVVAISG-TIAA 109 P F+++ ++DG L+GS IDI+NRAAP+ L A+GMTLVIAT GID+SVGAV+AI+G T AA Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 110 MLIGGTMVVNNGVPEYVSNIPMGWALAAALGVALLCGAWNGLLVATLGLQPIIATLILMV 169 M + G ++P+ L +ALG +L G WNG+LVA L +QP +ATLILMV Sbjct: 100 MTVAGF------------SLPI--VLLSALGTGILAGLWNGILVAILKIQPFVATLILMV 145 Query: 170 AGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMFVVLALLMRKTALGLFI 229 AGRG+AQL+T GQIIT + GSG L LP + I ++ LL RKTALG+FI Sbjct: 146 AGRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFI 205 Query: 230 QSVGINPVASRLAGIRTAALIFFVYIFCSLCAGLAGLMISANIKSADANNAGLLLELDAI 289 ++VGIN A++ AG+ T ++ Y+ LCA +AG++++A+I+ ADANNAGL LELDAI Sbjct: 206 EAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAI 265 Query: 290 LAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTIYSLGVPPEVNMVVKSVVVFLVCLSQS 349 LAV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK+VVV V + QS Sbjct: 266 LAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQS 325 Query: 350 PEF 352 F Sbjct: 326 QRF 328