BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0081.p (357 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmi... 535 e-152 SMb20895 [G] COG4213 ABC-type xylose transport system, periplasm... 520 e-147 BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic... 473 e-133 mll5659 [G] COG4213 ABC-type xylose transport system, periplasmi... 402 e-112 BMEII0360 [G] COG4213 ABC-type xylose transport system, periplas... 357 2e-98 >AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 354 Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/355 (75%), Positives = 306/355 (86%), Gaps = 1/355 (0%) Query: 3 LKSVLAGLTLGLSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQ 62 +KS+++ L ++G + +A AQ KG +GI+MPTKSSARWI DGNN+VK +E GY+ Sbjct: 1 MKSIIS-LMAACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK 59 Query: 63 TDLQYAEDDIPNQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIR 122 TDLQYA+DDIPNQL+QIENMVTKGVKVLVIA+IDGTTLSDVL++A ++GIKVIAYDRLIR Sbjct: 60 TDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIR 119 Query: 123 NSKNVDYYATFDNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMS 182 NS +V YYATFDN+QVGVLQA+ I L LK GKGPFNIELFGGS DDNNAFFFY+GAMS Sbjct: 120 NSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMS 179 Query: 183 VLKPYIDKGKLVVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGI 242 VLKPYID GKLVV+S QMGMDKV TLRWD ATAQARMDNLLSAYY +A VDAVLSPYDG+ Sbjct: 180 VLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGL 239 Query: 243 SIGIISSLKGVGYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMV 302 SIGIISSLKGVGYGT P+PVV+GQDAEVPSVKSII GEQ ST+FKDTRELAKVTV+MV Sbjct: 240 SIGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMV 299 Query: 303 DAVLSGKAPTINDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 +AV+ GK P +NDTKTY NGVKV+PSYLLKPV+V N+K+VLV GYY E Q+K Sbjct: 300 NAVMEGKEPEVNDTKTYENGVKVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK 354 >SMb20895 [G] COG4213 ABC-type xylose transport system, periplasmic component Sme Sinorhizobium meliloti Length = 355 Score = 520 bits (1339), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/335 (74%), Positives = 289/335 (86%) Query: 22 SAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQTDLQYAEDDIPNQLAQIEN 81 +A AQ KG++GISMPTK+S RWI+DG M K+FKE GY DLQ+A+DDIPNQLAQIEN Sbjct: 19 AAPAVAQEKGMVGISMPTKTSTRWISDGETMEKLFKEAGYTPDLQFADDDIPNQLAQIEN 78 Query: 82 MVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIRNSKNVDYYATFDNYQVGVL 141 MVTKG KVLVI AIDGTTLSD+LQKAAD G+KVIAYDRLIR+S NVDYYATFDN+QVGVL Sbjct: 79 MVTKGAKVLVIGAIDGTTLSDILQKAADAGVKVIAYDRLIRDSGNVDYYATFDNFQVGVL 138 Query: 142 QASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKGKLVVRSKQMG 201 QA+ + + L L P N+ELFGGS DDNNAFFFY+GAMSVL+P ID GK+VV+S QMG Sbjct: 139 QATSLVEGLKLDSATEPKNVELFGGSPDDNNAFFFYDGAMSVLQPLIDSGKIVVKSGQMG 198 Query: 202 MDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGISIGIISSLKGVGYGTPKLP 261 MD+V TLRWDGA AQARM+NLLS+ Y +A VD VLSPYDG+SIGIIS+LKGVGYG+ +P Sbjct: 199 MDQVGTLRWDGAVAQARMENLLSSAYTDAKVDGVLSPYDGLSIGIISALKGVGYGSGDMP 258 Query: 262 MPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAPTINDTKTYNN 321 MP+VTGQDAE+PSVKSI+ GEQ STVFKDTRELAKVTV+MV+A++ GK P +NDTKTY N Sbjct: 259 MPIVTGQDAELPSVKSILAGEQYSTVFKDTRELAKVTVNMVNAIMDGKEPEVNDTKTYEN 318 Query: 322 GVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQV 356 GVKV+PSYLLKPVSVD SN K+VLVGSGYYTE Q+ Sbjct: 319 GVKVVPSYLLKPVSVDKSNAKDVLVGSGYYTEDQL 353 >BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic component Bha Bacillus halodurans Length = 359 Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/332 (68%), Positives = 270/332 (81%) Query: 26 SAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQTDLQYAEDDIPNQLAQIENMVTK 85 S G +GISMPT+SS RWIADGNNMV+ F+ GY+T+LQY ED I NQ+ QIENM+T+ Sbjct: 27 SGDGSGTVGISMPTQSSERWIADGNNMVEQFEALGYETNLQYGEDVIENQIDQIENMITR 86 Query: 86 GVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIRNSKNVDYYATFDNYQVGVLQASY 145 GV LVIAAIDG +L++VL+ A I VI+YDRLIRNS++V YYATFDNYQVGVL+ Y Sbjct: 87 GVDALVIAAIDGESLTEVLELAHSMEIPVISYDRLIRNSEHVSYYATFDNYQVGVLKGEY 146 Query: 146 IEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKGKLVVRSKQMGMDKV 205 IE L L G+GPFNIELF GS DDNNA+FF++GAMSVL+PYID G+LVV+S Q +V Sbjct: 147 IEGYLGLDEGEGPFNIELFAGSPDDNNAYFFFDGAMSVLQPYIDNGQLVVQSGQTDFQQV 206 Query: 206 ATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGISIGIISSLKGVGYGTPKLPMPVV 265 ATLRWDG+ AQ RMDNLLS +Y + +DAVLSPYDGISIGIISSLKGVGYG+ LPMPVV Sbjct: 207 ATLRWDGSLAQERMDNLLSGFYTDKTLDAVLSPYDGISIGIISSLKGVGYGSGDLPMPVV 266 Query: 266 TGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAPTINDTKTYNNGVKV 325 TGQDAE PS+ SII GEQ T+FKDTRELA V MVDAVL G+ P +NDT+TY NGVKV Sbjct: 267 TGQDAERPSIASIIAGEQTQTIFKDTRELAGKAVEMVDAVLKGEEPEVNDTETYENGVKV 326 Query: 326 IPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 +PSYLL+P+SVD++N+KEVLVGSGYY E+ + Sbjct: 327 VPSYLLEPISVDINNYKEVLVGSGYYDESDFE 358 >mll5659 [G] COG4213 ABC-type xylose transport system, periplasmic component Mlo Mesorhizobium loti Length = 356 Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust. Identities = 215/341 (63%), Positives = 256/341 (75%), Gaps = 4/341 (1%) Query: 19 MAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQTDLQYAEDDIPNQLAQ 78 M SA A KGL+G+ MPTK+S RWI DG+ + + GY DLQYA+DDIPNQL+Q Sbjct: 18 MTYSAH--AADKGLVGVLMPTKTSQRWINDGDAVKSQLEALGYTVDLQYAQDDIPNQLSQ 75 Query: 79 IENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIRNSKNVDYYATFDNYQV 138 +EN +TKG K L+IA+IDGTTLSD LQKAAD G+ V+AYDRLI+ + NVDYY TFDN+ V Sbjct: 76 LENEITKGPKALIIASIDGTTLSDALQKAADAGVVVVAYDRLIKKTANVDYYTTFDNFGV 135 Query: 139 GVLQASYIEKALDLK-GGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKGKLVVRS 197 GV+QA+ + K L + P+N+ELFGGS DDNNAFFFYNGA+SVL+P ID G + ++S Sbjct: 136 GVIQANSLVKGLKERFPNTKPWNVELFGGSPDDNNAFFFYNGAISVLQPLIDDGSIKIKS 195 Query: 198 KQMGMDKVATLRWDGATAQARMDNLLSAYYGN-AHVDAVLSPYDGISIGIISSLKGVGYG 256 QMGMDKV TLRW ATAQARMDNLLSA Y + + VD VLSPYDG+S GI +SL+ VGYG Sbjct: 196 GQMGMDKVGTLRWLAATAQARMDNLLSANYSDGSRVDGVLSPYDGLSRGITASLRAVGYG 255 Query: 257 TPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAPTINDT 316 T P PVVTGQDAE SVK II GEQ STVFKDTRELAK TV +VD VLSG P DT Sbjct: 256 TAAQPWPVVTGQDAETASVKLIISGEQYSTVFKDTRELAKSTVELVDKVLSGGKPDGLDT 315 Query: 317 KTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 KTYNN VKV+PS LL P VD SN+++++V SGY +K Sbjct: 316 KTYNNDVKVVPSILLTPHEVDKSNYQKLVVDSGYIKAEDLK 356 >BMEII0360 [G] COG4213 ABC-type xylose transport system, periplasmic component Bme Brucella melitensis Length = 218 Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/218 (78%), Positives = 193/218 (88%) Query: 140 VLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKGKLVVRSKQ 199 +LQA IEKALDLK GPFNIELFGGS DDNNA+FFYNGAMSVL+PYID GKLVV S Q Sbjct: 1 MLQAQSIEKALDLKNKPGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYIDSGKLVVGSGQ 60 Query: 200 MGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGISIGIISSLKGVGYGTPK 259 GMDKVATLRWDGATAQARMD++LSAYY + +DAVLSPYDGISIGI+SSLKGVGYG+ Sbjct: 61 TGMDKVATLRWDGATAQARMDSILSAYYSDKKLDAVLSPYDGISIGILSSLKGVGYGSGD 120 Query: 260 LPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAPTINDTKTY 319 +PMPVV+GQDAE+PSVKSI+ GEQ ST+FKDTRELAKVTV MVDA+++GK P +NDTKTY Sbjct: 121 MPMPVVSGQDAEIPSVKSILAGEQNSTIFKDTRELAKVTVDMVDALMTGKEPEVNDTKTY 180 Query: 320 NNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 NNGVKV+PSYLLKPV VD SNWK+VLV SGYY E Q+K Sbjct: 181 NNGVKVVPSYLLKPVIVDKSNWKQVLVDSGYYKEDQIK 218