BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0078.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0362 [G] COG4214 ABC-type xylose transport system, permease...    97   2e-20
SMb20893 [G] COG4214 ABC-type xylose transport system, permease ...    91   7e-19
AGc4262 [G] COG4214 ABC-type xylose transport system, permease c...    90   2e-18
BH3440 [G] COG4214 ABC-type xylose transport system, permease co...    84   1e-16
mll5656 [G] COG4214 ABC-type xylose transport system, permease c...    82   3e-16

>BMEII0362 [G] COG4214 ABC-type xylose transport system, permease component
          Bme Brucella melitensis
          Length = 396

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 8  DAVPEAKREYAG-FLKNNMREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYVV 66
          + +   ++   G +LKNN+RE GMLLSLVAIM FF ++T G LM+PLNLTNLVLQNSY+V
Sbjct: 4  NVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFHIVTGGVLMKPLNLTNLVLQNSYIV 63

Query: 67 IMALGMLMVIVAG 79
          IMALGML++IV G
Sbjct: 64 IMALGMLLIIVTG 76


>SMb20893 [G] COG4214 ABC-type xylose transport system, permease component
          Sme Sinorhizobium meliloti
          Length = 404

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 59/73 (80%), Gaps = 1/73 (1%)

Query: 8  DAVPEAKREYAG-FLKNNMREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYVV 66
          D   E  +   G +L+NN+REYG+L++LV IM FFQ +T+G L +P+N+TNLVLQNS++V
Sbjct: 4  DTSTETTKPSIGDYLRNNIREYGLLVALVIIMLFFQFVTNGVLFRPVNITNLVLQNSFIV 63

Query: 67 IMALGMLMVIVAG 79
          IMALGML++IVAG
Sbjct: 64 IMALGMLLIIVAG 76


>AGc4262 [G] COG4214 ABC-type xylose transport system, permease component
          Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 398

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 54/60 (90%)

Query: 20 FLKNNMREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYVVIMALGMLMVIVAG 79
          ++++N+REYGML++LVAIM FFQ  T G L +P+NLTNL+LQNS++VIMALGML+VIVAG
Sbjct: 19 YIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAG 78


>BH3440 [G] COG4214 ABC-type xylose transport system, permease component
          Bha Bacillus halodurans
          Length = 388

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 55/64 (85%)

Query: 16 EYAGFLKNNMREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYVVIMALGMLMV 75
          + A  LKNNMR YGM+++L+ I+  F V++DG L++PLN+TNL+LQNSY++++A+GM+MV
Sbjct: 2  KLAELLKNNMRSYGMIVALMFIILLFSVLSDGILLRPLNVTNLILQNSYILVLAIGMVMV 61

Query: 76 IVAG 79
          I+AG
Sbjct: 62 IIAG 65


>mll5656 [G] COG4214 ABC-type xylose transport system, permease component
          Mlo Mesorhizobium loti
          Length = 428

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 51/61 (83%)

Query: 21 LKNNMREYGMLLSLVAIMAFFQVMTDGTLMQPLNLTNLVLQNSYVVIMALGMLMVIVAGV 80
          L  N+REYG++++L+ IM FFQ  T GTL +P+NL+NLV QNS++++MALGML+VIV+G 
Sbjct: 26 LTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLVIVSGY 85

Query: 81 I 81
          I
Sbjct: 86 I 86