BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0072.p (246 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 137 2e-32 AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 128 9e-30 SMb20896 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 122 1e-27 PA2469 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 104 2e-22 mlr5660 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 103 4e-22 >PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 315 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 142/248 (57%), Gaps = 5/248 (2%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MR T +GE +I +SRM LS E++VAL+SG G+V VG I + SL+ IA +K Sbjct: 68 MRATPFGETLIYYSRMIFAELSGMREELVALESGNLGRVTVGAIPALASSLLTRTIATLK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 + P L + ++V++S++L+ L + LD ++ RI + +L ++ L +E +C V Sbjct: 128 QSHPRLSMSIQVDTSDVLVQALQQDQLDVVLGRIPSGARTDDLVFDSLGEEELCVVVGAQ 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 +PL + + + ++ + W++ S +R V+ F + + P+++V+TT+I+T+ SLL Sbjct: 188 NPLSQARKLDWGELQELTWVLQQHPSPMRGIVNQAFHNARIDLPSSIVETTSIMTLLSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPG-----ATILQ 235 QQTD + P V Y L+ +LPI+L ++ +G+ITRR ++ S A++ Sbjct: 248 QQTDMIGITPRSVIEDYPGKHLLAILPIQLEPRLPPYGLITRRNRVHSSAMQTFMASVHA 307 Query: 236 QAIRDVAK 243 + R +AK Sbjct: 308 EQARHLAK 315 >AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 341 Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 4/246 (1%) Query: 4 TIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVKEHS 63 T +GEA+ R +R L L +A ++ +KSG G V +G + +P +SLV AI R + Sbjct: 93 TKFGEALARRARTILLELREASRELNQMKSGSGGSVYIGAVTAPAISLVVPAIRRAMDTY 152 Query: 64 PMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVGHPL 123 P + I V+VESSN+L LL DF++ RI D+ E+ E C V R GHPL Sbjct: 153 PGIEINVQVESSNVLARELLAARHDFIIGRIPDDFDPGLFSIHEIGIERACLVVREGHPL 212 Query: 124 HEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLLQQT 183 + +TL+D+ + W+ P G++LR ++ +F G+ P NV++T +++ +L+ T Sbjct: 213 MRGEPVTLQDLSGYDWVFQPPGALLRRTMEDVFLTHGVAMPRNVINTPSVVLTLALVCNT 272 Query: 184 DFLYAMPTEVARYYS--QARL--MDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIR 239 + + + ++A + + QA + +LP + + + IIT + ++L P A +L + Sbjct: 273 NAIAPIAQDMAEFVAGQQADIGRTRILPTDFELVVKPYSIITTKGRVLPPSARLLYDLVL 332 Query: 240 DVAKTI 245 D ++ + Sbjct: 333 DESRKL 338 >SMb20896 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 302 Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 130/239 (54%), Gaps = 4/239 (1%) Query: 4 TIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVKEHS 63 T YGEA+ R +R L +A +I LK+G G V +G + PGL+L AI +V Sbjct: 58 TRYGEALARRARTIFLELREAAREINELKTGSGGSVSLGSVTGPGLNLAVPAIRQVSTAY 117 Query: 64 PMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVGHPL 123 P + I V++++SN+L LL DF+V RI D+ + E+ E +C + R GHPL Sbjct: 118 PGIEINVQIDNSNVLTRELLAARHDFIVGRIPDDLNPRLFNLVEIGFEEVCLIVREGHPL 177 Query: 124 HEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLLQQT 183 + + + D+ + W+ P G++LR V+ F +G+ PA V++T++ + S+++ T Sbjct: 178 LDKASASAHDLPAYDWVFQPPGTLLRRAVEDSFASAGVRLPATVINTSSTILTLSIVRNT 237 Query: 184 DFLYAMPTEVARYY----SQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAI 238 + + + +VAR ++A + +LP E P ++ +G+IT + L P A +L I Sbjct: 238 NAIAPVALDVARLVAGNGTEAGEIRILPTEFPIRIKPYGLITAEGRALPPSAKLLYDLI 296 >PA2469 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 304 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 1/224 (0%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 +RPT YG + H++ LT + +A +++ A++SG +V +G + SLVP A+ Sbjct: 61 LRPTPYGMTLFNHAQRVLTEMERARQNLEAMRSGSGSRVLLGTSPASAPSLVPRALRAFL 120 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 P ++ + + N LL RL + LD +V R+ + +L E L E I +AR G Sbjct: 121 GRYPGAQVELLEGTMNGLLERLEKRQLDVVVGRLDNYAPRASLRCEVLYSEAIVVMARPG 180 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL + + +D+ + WI+ P GS +RS++D+ + G PPA ++++++L LL Sbjct: 181 HPLAQAAALDWEDVRRYDWIVWPPGSPIRSKLDMALTQGGRQPPAYRLESSSMLANIELL 240 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRRE 224 + +D L V + + L+ L +E+P + G+ R E Sbjct: 241 RGSDMLSIGSARVVEHLAGLGLVARLALEIPGE-GAVGMCWRDE 283 >mlr5660 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 296 Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 4/239 (1%) Query: 4 TIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVKEHS 63 T YG+A+ R R L + + +I LK+G G V +G + +P + L AI ++ Sbjct: 53 TPYGKALARRGRSILLEMREVDREISELKAGKGGSVFLGAVTAPAIELAVPAIREIRRIY 112 Query: 64 PMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVGHPL 123 P + I ++VE+SN+L L+ DF++ARI D+ + E C + R GHPL Sbjct: 113 PRIEITMQVETSNVLARELIASRHDFIIARIPDDLNPRLFESRVIGVEKACLIVRRGHPL 172 Query: 124 HEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLLQQT 183 + L+D + W+ GS LR ++ F + P +++T+++L ++ Q+ Sbjct: 173 TSGSVVRLEDTAAYDWVFQSGGSPLRQAMESNFLNRNIALPDRILNTSSLLLTLVMVAQS 232 Query: 184 DFLYAMPTEVARYYSQ----ARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAI 238 D + + +VA++ A +D++ E ++ + +IT R + LSP A +L I Sbjct: 233 DAIAPVSVQVAKFIQNPDGLAGAIDVVQTEFDIEVRPYSLITVRNRALSPAAKMLHDFI 291