BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0063.p (310 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 317 3e-86 ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 235 1e-61 ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 235 1e-61 yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 233 3e-61 STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 226 7e-59 >RSc2209 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 317 bits (811), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 172/303 (56%), Positives = 213/303 (70%), Gaps = 5/303 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+LESL++LD I+RKGSFAAAA L +VPSALTY VRKLEDDLDVLLFDRR HRA+LT Sbjct: 1 MALSLESLEVLDAIERKGSFAAAAHELGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 PAGR LL EGRHLL AAD+L +RVKR ATG E L IV++ ++ F ++P+I F E Sbjct: 61 PAGRALLDEGRHLLQAADELARRVKRLATGWEATLTIVMDDLVHFRALMPVIQDFYAENT 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRLRF VL+G+WD +L+GRADL+I GP + QTR LG I ++FAVA Sbjct: 121 ATRLRFCREVLAGSWDALLSGRADLLI-----GPAHIAPVQGVQTRPLGEIPFVFAVAAH 175 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPL + RHR VAVGD+SRN P T+G++AGQ+TL VP +A K+QAQ+ GL Sbjct: 176 HPLAQLEEPLPASAIARHRIVAVGDTSRNLPPRTVGIMAGQDTLVVPAMADKVQAQIRGL 235 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCG LPR A PYL SG L+ K T + NF IAW +GK+L+W++ L P + + Sbjct: 236 GCGWLPRPLAQPYLDSGVLVAKATVEDRRAGNFQIAWRTNMRGKALQWWVDKLEDPRLAQ 295 Query: 301 ALL 303 ALL Sbjct: 296 ALL 298 >ZyeeY [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 316 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 4/289 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+ L ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRAK T Sbjct: 8 MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT 67 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 G+ LL +GR +L +LE++ + G E EL I ++ PF+ + PLI AF + Sbjct: 68 RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHN 127 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRL+F GVL G+WD + GRAD+++GA + P +S F +LG ++ +FAVAP Sbjct: 128 VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPH 183 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPL+ +++R+RA+ VGD+++ LL QE +TV KL+ Q++GL Sbjct: 184 HPLAQEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGL 243 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWF 289 GCG+LPRY A +L SGALIEK+ E I W + G + W+ Sbjct: 244 GCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >ECs2817 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 316 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 4/289 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+ L ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRAK T Sbjct: 8 MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT 67 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 G+ LL +GR +L +LE++ + G E EL I ++ PF+ + PLI AF + Sbjct: 68 RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHN 127 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRL+F GVL G+WD + GRAD+++GA + P +S F +LG ++ +FAVAP Sbjct: 128 VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPH 183 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPL+ +++R+RA+ VGD+++ LL QE +TV KL+ Q++GL Sbjct: 184 HPLAQEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGL 243 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWF 289 GCG+LPRY A +L SGALIEK+ E I W + G + W+ Sbjct: 244 GCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >yeeY [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 316 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 4/289 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+ L ILD ++++GSFAAA+ L + PSAL+Y+V KLE DL++ L DR GHRAK T Sbjct: 8 MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFT 67 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 G+ LL +GR +L +LE++ + G E EL I ++ PF+ + PLI AF + Sbjct: 68 RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHS 127 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRL+F GVL G+WD + GRAD+++GA + P +S F +LG ++ +FAVAP Sbjct: 128 VTRLKFINGVLGGSWDALTQGRADIIVGAMHEPP----SSSEFGFSRLGDLEQVFAVAPH 183 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPL+ +++R+RA+ VGD+++ LL QE +TV KL+ Q++GL Sbjct: 184 HPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGL 243 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWF 289 GCG+LPRY A +L SGALIEK+ E I W + G + W+ Sbjct: 244 GCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWW 292 >STM2069 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 121/289 (41%), Positives = 175/289 (60%), Gaps = 4/289 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+ L ILD ++++GSFAAA+ L + PSAL+Y+V KLE+DL++ L DR GHRA+ T Sbjct: 1 MKPLLDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLENDLNIQLLDRSGHRARFT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 G+ LL +GR +L +LE++ + G E EL I ++ PF+ + PLI AF + Sbjct: 61 RTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIDAFYQRHS 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRL+F GVL G+W+ + GRAD+++GA P F +LG ++ +FAVAP Sbjct: 121 VTRLKFVNGVLGGSWETLTQGRADIIVGAMRAPP----PDTGFGFARLGDLELVFAVAPH 176 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPL EPLS + ++R RA+ VGDS + + LL QE +TV KL+ Q++GL Sbjct: 177 HPLVHEEEPLSRQTIKRFRAIVVGDSVHSSRSIGSELLDAQEAITVFDFKTKLELQISGL 236 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWF 289 GCG+LPRY A +L SGALIEK+ +E + W + G + W+ Sbjct: 237 GCGYLPRYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQTAGLASGWW 285