BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0059.p         (364 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM1863 [M] COG3307 Lipid A core - O-antigen ligase and related e...   129   1e-29
HI0874 [M] COG3307 Lipid A core - O-antigen ligase and related e...   118   2e-26
RSc2204 [M] COG3307 Lipid A core - O-antigen ligase and related ...    99   2e-20

>PM1863 [M] COG3307 Lipid A core - O-antigen ligase and related enzymes Pmu
           Pasteurella multocida
          Length = 257

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 4/243 (1%)

Query: 118 QQKSSVYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFT 177
           QQ   + W I        G+LGS+ + +RG W+GLP  L     AY   +SK+ +     
Sbjct: 18  QQYRQMLWAII---ATLFGILGSVLSTARGGWIGLPLLLCFALFAYRQYLSKKILFFVSL 74

Query: 178 AVVVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRNADS-SLGTRMEMWRVGFMAATERP 236
             V  +A     P+T +  R   A +ET  Y   +   S S+G R  +W+   + A E+P
Sbjct: 75  FFVFLLAAVAFAPKTKLISRVTEAYTETQQYFDAQAEQSTSIGARFALWKSALLMAKEKP 134

Query: 237 LLGFGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLR 296
           LLG+G AG ++    +   G I        H +N++LD ++K GL GL+ALL ++++P  
Sbjct: 135 LLGWGNAGAMEKRQVQQQEGMISEYAANFTHAHNQYLDNLSKYGLVGLVALLAIFSVPFC 194

Query: 297 LFMQHAKTASRRAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGE 356
            F +         K  A  GM+ +++ +C+  +Q F+ HN+G +    S  I +G L+  
Sbjct: 195 YFYRKRHAIKGEEKLVATLGMLHIISVMCYSLTQAFLNHNSGNIFYFLSVFIFYGCLKHS 254

Query: 357 EAK 359
           E +
Sbjct: 255 EKE 257


>HI0874 [M] COG3307 Lipid A core - O-antigen ligase and related enzymes Hin
           Haemophilus influenzae
          Length = 399

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 176/340 (51%), Gaps = 10/340 (2%)

Query: 2   SRDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPALLLLRAYPPSPALFWS 61
           S +DK ++  F FYF   +   +++ + ++E D P R LL +P LLL + +P        
Sbjct: 54  SSEDKKLIFSFLFYFFTFLLSIIINKDGIREIDNPSRLLLFIPLLLLFKNFPIKRKTILY 113

Query: 62  GLIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNIS-SLVGMLCLAGLGWAI--Q 118
            +    ++ G    +Q    +A    +    T  IQ GNI+ SL     +  L + I  Q
Sbjct: 114 AIPSSALITGCVALFQK---FALGYEKPFPETMHIQMGNIAISLATFSIVITLHFFIKKQ 170

Query: 119 QKSSVYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTA 178
            KS+++  + ++    + ++ S  +G+RG W+GLP  + I+   Y   ++K+ ++     
Sbjct: 171 YKSTLFGFVAII----LAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKLIITLIAI 226

Query: 179 VVVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPLL 238
           + + +      P+  +++R + A S+ +SYL+  N ++SLG R +MW    +A  E P+ 
Sbjct: 227 ITIGLTALITSPKFGIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIF 286

Query: 239 GFGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRLF 298
           G G  G  ++   ++ + ++         ++N++L++  KRGL G IAL+++   P+  F
Sbjct: 287 GHGSDGYDEFRHKQVKSKQMAKTTLNFGSLHNQYLESWVKRGLVGFIALILIILTPIFYF 346

Query: 299 MQHAKTASRRAKPYAIGGMMLVVNYICFGFSQVFMAHNTG 338
           +++  T +   K   I G++ +V++I +  SQ F+AHN+G
Sbjct: 347 IKNLNTHNLETKCICILGIIHIVSHIFYFTSQSFLAHNSG 386


>RSc2204 [M] COG3307 Lipid A core - O-antigen ligase and related enzymes Rso
           Ralstonia solanacearum
          Length = 435

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 159/344 (46%), Gaps = 17/344 (4%)

Query: 12  FCFYFVVSVAMNLLHGEIV-KEYDLPLRFLLAVPALLLLRAYPPSPALFWS--GLIIGGI 68
            C      +   + HG++    +D P RFL AVP  LLLR   P  AL W+      G +
Sbjct: 79  LCMPLAAVILSEVWHGQLRWNAFDAPARFLAAVPLFLLLR-RAPLRALRWADGSFAAGAL 137

Query: 69  LAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCLAGLGWAIQQKSSVYWVIF 128
            A     W       G M       NPI +G+I+ ++G+L    + W   +K  +   + 
Sbjct: 138 AALGVGLWAARDWGEGRM--GSAFLNPIHFGDIALILGVLSALSINW--WRKDPLAVRLL 193

Query: 129 LLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTAVVVAIAVAYA 188
            + G   G++ SL TGSRG WV LPF L ++  A G +   R+ +      V+ + V YA
Sbjct: 194 KVGGLLAGLVASLLTGSRGGWVALPFILLLVAVARGRDKPARWRVLVPAVAVLGVVVLYA 253

Query: 189 IPRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPLLGFGKAGLVKW 248
           +  T + ER H+   +   Y + +  D+S+G R+++++   M   + P+ G G  G    
Sbjct: 254 VSGT-IHERIHMVWVDLAQYAQGQK-DTSIGIRLQIYQAALMLIPKHPIFGLGPGGFADS 311

Query: 249 ESAEIAAGRIDPLME--GNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRLFMQHAKTAS 306
             A + AGR+       G    +N+ L   A  GL G ++++ ++ +P  L  +  K A+
Sbjct: 312 LQALVDAGRMSATAAQLGRGEAHNQLLAYTANFGLVGGLSIVAIHLVPGLLCWRCLKAAA 371

Query: 307 RRAKPYAIGGMMLVVNYICFGFS-QVFMAHNTGVMTLAFSTVIL 349
              +  A+ G +  + +  FG + ++F    T  MT +F   ++
Sbjct: 372 APMRRAALMGAVFALAFFVFGLTVEIF----TLKMTASFYAAVI 411