BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0054.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 161 1e-39 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 157 1e-38 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 156 3e-38 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 154 1e-37 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 62 1e-09 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 116/184 (63%), Gaps = 1/184 (0%) Query: 22 LAALLACAFAGAQAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVA 81 L A LA AG+ AA S VKIGILNDQSG+YAD G S EAA MA+E+ GG V Sbjct: 5 LIATLAMVLAGSTAALADASDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFGGKVL 64 Query: 82 GKKIELVSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAMIA 141 G +E+V+ +HQNK D+ + IAR W+D + VD I + + SSVA AVQ ++ E+ KI ++ Sbjct: 65 GVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVT 124 Query: 142 -AASSDFTGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMK 200 AA+++ TGK C+ W Y++++ G L +QG +SWF LT DYAFG++ + Sbjct: 125 GAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTG 184 Query: 201 AAIK 204 +K Sbjct: 185 NYVK 188 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/162 (47%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 45 VKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVAGKKIELVSGNHQNKADVGAVIAR 104 VKIGILNDQSG+YA+ G S EAAKMA+E+ GG V G +E+V+ +HQNKADV + IAR Sbjct: 29 VKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADVASNIAR 88 Query: 105 GWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAM-IAAASSDFTGKSCTATSAQWVYNS 163 W+D + VD I + ++SSV AVQ L+ ++ KI + AA+++ TGK C+ W Y++ Sbjct: 89 QWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWAYDT 148 Query: 164 YTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMKAAIKA 205 Y+ G L +QG +SWF LT DYAFG++ + +KA Sbjct: 149 YSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKA 190 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 4/185 (2%) Query: 22 LAALLACAFAGAQAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVA 81 +AA L A +GA A SGD VKIG + D SGLYAD+ G G VEA KMAIE+ GG V Sbjct: 11 MAAGLGLAASGAHAQ---VSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGKVL 67 Query: 82 GKKIELVSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAM-I 140 GK IELV+ +HQNKAD+ A AR W D+ G+DM+ +NS+ + A+ +AAE+ ++ + I Sbjct: 68 GKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGI 127 Query: 141 AAASSDFTGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMK 200 A ++ T + CT + + Y++ G + +QG SWF LT DYAFGH+ +D Sbjct: 128 GAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTA 187 Query: 201 AAIKA 205 A +KA Sbjct: 188 AVVKA 192 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/152 (49%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 45 VKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVAGKKIELVSGNHQNKADVGAVIAR 104 VKIGILNDQSG+YAD G S EAAKMA E+ GG V G IE+++ +HQNK DV + IAR Sbjct: 28 VKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPDVASNIAR 87 Query: 105 GWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAM-IAAASSDFTGKSCTATSAQWVYNS 163 W+D + VD I + + SSV AVQ L+ E+ KI + AA+S+ TGK CT W Y++ Sbjct: 88 QWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGFHWAYDT 147 Query: 164 YTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAF 195 + G L +QG ++W+ LT DYAFG++ Sbjct: 148 HALAVGTGGSLVQQGGDTWYFLTADYAFGYSL 179 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 45 VKIGILNDQSGLYADLAGLGSVEAAKMAIEEMG--GAVAGKKIELVSGNHQNKADVGAVI 102 ++IG+++ +G+YA +A V A++A+ ++ G + G+ IEL+ + N G Sbjct: 40 LRIGMVDPMTGVYAAVAQ-NEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTGVQK 98 Query: 103 ARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAMIAAASSD-FTGKSCTATSAQWVY 161 AR ++D V + NS +A A+ ++ E+ + +++ +D TG C + Sbjct: 99 ARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYRVCN 158 Query: 162 NSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAF 195 + +A +L + W +T DYAFGH Sbjct: 159 TTSMEANAVANLLFSKYGKKWHFITPDYAFGHTL 192