BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0053.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport...   197   7e-51
BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo...   192   3e-49
SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor...   184   6e-47
RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport...   159   3e-39

>AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 402

 Score =  197 bits (501), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 117/158 (74%)

Query: 1   VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60
           V   Q LAA    L ++HG+GL+AAQGL     FYWDR++ +R++ +RF +R  AMP M 
Sbjct: 245 VAGGQRLAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMI 304

Query: 61  QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120
             G YS+VLHYLKA++ A TD+A  V K M+E+PV+D+FA++GH+  +G+M+HDM+L+EV
Sbjct: 305 HTGTYSAVLHYLKAIEKAGTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEV 364

Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158
           KKP ESK PWDYYKVL+TIPG + F    +S CPLVK+
Sbjct: 365 KKPDESKQPWDYYKVLATIPGKEAFMDPTKSGCPLVKQ 402


>BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Bme Brucella melitensis
          Length = 401

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 114/158 (72%)

Query: 1   VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60
           V   Q LAA    L ++HG+GL+AAQGL     FYWDR++ +R + KRF  R   MP M 
Sbjct: 244 VAGGQRLAALLFTLAEVHGLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMI 303

Query: 61  QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120
           QAG YS+VL YLKA+K A TD    V KK+ E+PV+D+FA++G +  +G+M++DM+L+EV
Sbjct: 304 QAGTYSAVLQYLKAIKEAGTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEV 363

Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158
           KKP ESKAPWDYYKVL+TIPGD+ +    +S CPLVK+
Sbjct: 364 KKPEESKAPWDYYKVLATIPGDQAYMKPEESGCPLVKQ 401


>SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Sme Sinorhizobium meliloti
          Length = 401

 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 109/157 (69%)

Query: 1   VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60
           V   Q LAA    L ++HG+GL AAQGL     FYW+R+E + ++ KRF +R   MP M 
Sbjct: 244 VQGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMPNMV 303

Query: 61  QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120
            AG YS+VL YLKA++ A TD    V K++  LPVDD+FA+NG +  +G+M+HDM+L+EV
Sbjct: 304 HAGTYSAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYLLEV 363

Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVK 157
           KKP ESK PWDY+KVL+TIPG + F   AQS C LVK
Sbjct: 364 KKPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400


>RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 402

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60
           +T    +A   +F+ D+H +GL+ A+GL    ++YWD N+ TR++A R+  + K MP+  
Sbjct: 246 ITKTMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSSL 305

Query: 61  QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120
           QA  YS+V +Y+KAV AA TD+  +V+ ++++  ++D F++ G +R DG+ VHDM+L++V
Sbjct: 306 QAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFFSK-GTIRADGRYVHDMYLMQV 364

Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158
           K P+ESK PWDY K+++TIPGD+ F   A+S CPL+KK
Sbjct: 365 KTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402