BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0049.p (212 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1582 [TK] COG2197 Response regulator containing a CheY-like ... 145 5e-35 AGpA383 [TK] COG2197 Response regulator containing a CheY-like r... 142 7e-34 VC1277 [TK] COG2197 Response regulator containing a CheY-like re... 141 9e-34 DR0987 [TK] COG2197 Response regulator containing a CheY-like re... 132 5e-31 mll4697 [TK] COG2197 Response regulator containing a CheY-like r... 127 1e-29 >BMEI1582 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bme Brucella melitensis Length = 213 Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 124/207 (59%), Gaps = 2/207 (0%) Query: 1 MPEETPITNVMIVDDHPMIRDGLRARLESMPGVRVVAETGTADEALRHAAHQSINLVLMD 60 M E I V++VD+HP++ DGLRA LE+ + + A AL A + ++VLMD Sbjct: 1 MTNECKI-RVLLVDNHPLVLDGLRAVLETYDDIDIAGAASNARVALEMALAVNPDVVLMD 59 Query: 61 INLQGSSGIELTAKFQLNFPDIAVLILSMHNKAEYVLQSIRAGARGYVLKDAPGSDIVRA 120 IN+ +GI+ F+ P++ +L+LSMH+ EY+ SI GA GY+LKD ++IV A Sbjct: 60 INMPLLNGIDAIELFKRQLPNVRILMLSMHDSREYISTSIMRGASGYILKDVSTNEIVTA 119 Query: 121 IGAVLNGGVYYSAALM-PIIAQPRLKEETLTVRERQVLEQIARGASNKSIAETLDLSVRT 179 I AV +GG Y+S+ + ++ + E L+ RE VL +A G SN+ IA L +S T Sbjct: 120 IHAVASGGTYFSSGVSEALLESGEKRSEGLSARENDVLVLVAEGGSNREIAARLGISEAT 179 Query: 180 VETHCLNIKRKLDIEGRSELIKFALEN 206 VETH NIK+KL I + L ++A+EN Sbjct: 180 VETHRKNIKKKLGIASTAGLTRYAIEN 206 >AGpA383 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 210 Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 6/204 (2%) Query: 6 PITNVMIVDDHPMIRDGLRARLESMPGVRVVAETGTADEALRHAAHQSINLVLMDINLQG 65 PI V++VD+HP++ DGL+A LE+ + VV +A + A ++VLMDIN+ Sbjct: 5 PI-RVLLVDNHPLVLDGLKAVLETYEHIAVVGTAVSAMAGIDAAVATKPHVVLMDINMPQ 63 Query: 66 SSGIELTAKFQLNFPDIAVLILSMHNKAEYVLQSIRAGARGYVLKDAPGSDIVRAIGAVL 125 +GI+ F+ VL+LSMH+ EY+ S+ GA GY+LKD +IV AI V Sbjct: 64 INGIDALELFKERQLSARVLMLSMHDSREYISTSVMYGAAGYILKDVATEEIVAAIDTVA 123 Query: 126 NGGVYYSAALMPIIAQP---RLKEETLTVRERQVLEQIARGASNKSIAETLDLSVRTVET 182 GG Y+S+ + ++ + RLKE LT RE+ VL IARG SN+ A LD++ RT+ET Sbjct: 124 AGGTYFSSGVRDVLMESSTGRLKE--LTTREQDVLLLIARGKSNRDAALALDIAERTMET 181 Query: 183 HCLNIKRKLDIEGRSELIKFALEN 206 H NIKRKLDI + LI++A+++ Sbjct: 182 HRKNIKRKLDIATTAGLIRYAIDH 205 >VC1277 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 216 Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 14/212 (6%) Query: 4 ETPITNVMIVDDHPMIRDGLRARLESMPGVRVVAETGTADEALRHAAHQSINLVLMDINL 63 + PI VM VDDH ++ DG ARLE P + VVA EAL ++VLMD+++ Sbjct: 6 DKPIRVVM-VDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSM 64 Query: 64 QGSSGIELTAKFQLNFPDIAVLILSMHNKAEYVLQSIRAGARGYVLKDAPGSDIVRAIGA 123 +GIE T + P VL+L+MH+ EY++Q ++AGA GY+LK+ +V+AI Sbjct: 65 PIMNGIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKT 124 Query: 124 VLNGGVY---------YSAALMPIIAQPRLKEETLTVRERQVLEQIARGASNKSIAETLD 174 V G Y +S ++P+ +P L+ RE +L +A+G S+K IA L+ Sbjct: 125 VHQGATYFCESTTSTLFSQEILPVANKPN----PLSRREEAILRMVAQGCSSKKIATLLN 180 Query: 175 LSVRTVETHCLNIKRKLDIEGRSELIKFALEN 206 +S RTVETH NIK KLDI +EL ++AL++ Sbjct: 181 ISYRTVETHRQNIKHKLDIHSTAELAQYALQH 212 >DR0987 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Dra Deinococcus radiodurans Length = 239 Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 16/206 (7%) Query: 6 PITNVMIVDDHPMIRDGLRARLESMPGVRVVAETGTADEALRHAAHQSINLVLMDINLQG 65 PIT +++VDDHP++R G R LE +RVV E G+ +EAL A + +++LMD+++ G Sbjct: 25 PIT-LLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPG 83 Query: 66 SSGIELTAKFQLNFPDIAVLILSMHNKAEYVLQSIRAGARGYVLKDAPGSDIVRAIGAVL 125 +GIE T + P + VL+L+ ++ YV + AGA GY+LK+A D++ A+ AV Sbjct: 84 MNGIEATKAIKAEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVA 143 Query: 126 NGGVYYSAALMPIIAQ-----------PRLKEETLTVRERQVLEQIARGASNKSIAETLD 174 G +AL P IA+ P E+ L+ RE +VL A G +NK IA LD Sbjct: 144 AG----ESALHPSIARKVLERFSVASTPTPPEDDLSPRELEVLRVAASGRTNKEIARDLD 199 Query: 175 LSVRTVETHCLNIKRKLDIEGRSELI 200 +S RTV+ H NI KL + R+E + Sbjct: 200 ISPRTVQVHLANIFSKLGVGSRTEAV 225 >mll4697 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 215 Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 6 PITNVMIVDDHPMIRDGLRARLESMPGVRVVAETGTADEALRHAAHQSINLVLMDINLQG 65 P ++I DDHP++R G+RA LE V E + A+R A + +V++D +L Sbjct: 4 PRIKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPV 63 Query: 66 SSGIELTAKFQLNFPDIAVLILSMHNKAEYVLQSIRAGARGYVLKDAPGSDIVRAIGAVL 125 +G+E T + P+ VLI +MH + +++RAGARGY+LK S++V A+ A++ Sbjct: 64 LNGLEATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALI 123 Query: 126 NGGVYYSAALMPIIAQPRLKEET------LTVRERQVLEQIARGASNKSIAETLDLSVRT 179 G Y+S + + Q L ++ LT RER+V+ ++ G SNK IA L +SV+T Sbjct: 124 RGQTYFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKT 183 Query: 180 VETHCLNIKRKLDIEGRSELIKFALEN 206 V++H RKL + +L+++A+ N Sbjct: 184 VDSHRTTAMRKLGLRNAVDLVRYAIRN 210