BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0045.p (317 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 183 6e-46 AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 165 1e-40 BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella mel... 154 2e-37 PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 145 8e-35 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 139 1e-32 >SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 315 Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 15/299 (5%) Query: 6 PN--WNDLRIFLEVARGTLSGAAAKLRVXAGTLSGAAAKLRVDHSTISRRIAQLEAVLNA 63 PN W+DL+ FL VAR G LS AA +LR H+T+SRRI +LE L Sbjct: 3 PNFTWDDLQFFLAVAR-------------TGQLSTAARRLRTSHATVSRRIDRLEFALKV 49 Query: 64 PVFERDHQGFHITVKGRELLEHVEAMESGALAIGESLSGTSRIPSGPVRIATMEGIASLY 123 +FER+ +G+ +T G+ +E E ME + +S G VR++T+EG + + Sbjct: 50 KLFERNPRGYVLTTMGQRFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFF 109 Query: 124 LSRQFVSFKERYPLIQIELVTSTQLVHVSQREADVFLSFFPSEGKGLEVEPVGAFPLHLY 183 L+ + F ERYP I +ELV Q++ +S++EAD+ ++ + E + + LH+Y Sbjct: 110 LADRLGEFAERYPNISLELVAIQQIMSLSRKEADIAVALAAPKAGAYHAEVLTPYTLHVY 169 Query: 184 ASESYLARHGVPGSVGELRDHQFVSYVDDLIQLNTVRWLEEAIKNPQVVFHSSSMIAQLF 243 + SYLA + +L H+FV Y+DD+I + +L E + F SSS++ QL Sbjct: 170 GARSYLAGQPPIRTRSDLGSHRFVGYIDDMIFTPGLDYLGEIQPGLRAHFQSSSILTQLK 229 Query: 244 SAAEGGGIVMLPAFSNAERFGLRALLVDQIDVKRTIWMTVHRERCFMPRIKAVQQFIKD 302 + +G G+ +LP F + L +L D+I++KRT W+ HR+ +PR++AV+ F+ D Sbjct: 230 AVRQGLGLCVLPHFMAKDEPNLEIVLPDEIELKRTYWLICHRDLIAIPRVRAVRDFLVD 288 >AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 160/294 (54%), Gaps = 13/294 (4%) Query: 7 NWNDLRIFLEVARGTLSGAAAKLRVXAGTLSGAAAKLRVDHSTISRRIAQLEAVLNAPVF 66 W+DL+ FL VAR G LS AA LR H+T+SR I +LE L +F Sbjct: 6 TWDDLQYFLAVAR-------------TGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLF 52 Query: 67 ERDHQGFHITVKGRELLEHVEAMESGALAIGESLSGTSRIPSGPVRIATMEGIASLYLSR 126 ER+ +G+ +T GR L++ VE +E+ A + +S + + G VR++ EG ++ + Sbjct: 53 ERNPRGYELTTVGRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVE 112 Query: 127 QFVSFKERYPLIQIELVTSTQLVHVSQREADVFLSFFPSEGKGLEVEPVGAFPLHLYASE 186 + F +P I +E+VT Q++ +S++EADV ++ P + E + + LH+YAS Sbjct: 113 RLKDFAATHPHIMVEMVTIQQIMALSRKEADVAVTLDPPKAGPYINEQIIDYTLHIYASR 172 Query: 187 SYLARHGVPGSVGELRDHQFVSYVDDLIQLNTVRWLEEAIKNPQVVFHSSSMIAQLFSAA 246 SYLA H +L +H F+ YV DLI + ++ + + F SSS+ AQL + Sbjct: 173 SYLAGHPKITRREDLPNHFFIGYVQDLIFSPGLDYMRDVWPGLRPNFQSSSIFAQLTATL 232 Query: 247 EGGGIVMLPAFSNAERFGLRALLVDQIDVKRTIWMTVHRERCFMPRIKAVQQFI 300 G G+ +LP F A L+ +L ++++R W+T H++ +PR++++ FI Sbjct: 233 SGRGLCILPNFIAARFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFI 286 >BMEII0345 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 316 Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 152/294 (51%), Gaps = 13/294 (4%) Query: 7 NWNDLRIFLEVARGTLSGAAAKLRVXAGTLSGAAAKLRVDHSTISRRIAQLEAVLNAPVF 66 W+DL+ FL VAR G LS AA +LR H T+ RRI +LE L+ +F Sbjct: 17 TWDDLQYFLAVAR-------------TGQLSTAARQLRTSHVTVLRRIDRLEQALSTKLF 63 Query: 67 ERDHQGFHITVKGRELLEHVEAMESGALAIGESLSGTSRIPSGPVRIATMEGIASLYLSR 126 ER+ +G+ +T G L+E E ME A+ +G SG VR++T+EG + +L+ Sbjct: 64 ERNPRGYLLTPMGERLVEPAEVMEREAMKFQTEATGNLAALSGVVRLSTLEGFGNFFLAD 123 Query: 127 QFVSFKERYPLIQIELVTSTQLVHVSQREADVFLSFFPSEGKGLEVEPVGAFPLHLYASE 186 + + YP + +E+VT Q++ +S+RE ++ ++ E + + L +Y Sbjct: 124 RLPVLAQSYPSLFVEVVTIQQIMSLSRRETELSITLHMPRNGPYHSEKLMPYRLFIYGHR 183 Query: 187 SYLARHGVPGSVGELRDHQFVSYVDDLIQLNTVRWLEEAIKNPQVVFHSSSMIAQLFSAA 246 YLARH + ++ H F+ Y+DD++ + ++ E + + + SSS+ AQL + Sbjct: 184 DYLARHPPIRTREDMTGHPFIGYIDDMVFTPGLDYMREILPGQRCTYQSSSIHAQLIATQ 243 Query: 247 EGGGIVMLPAFSNAERFGLRALLVDQIDVKRTIWMTVHRERCFMPRIKAVQQFI 300 G G+ +LP F ++ L +L ++ + R WM+ H + PRI+ + F+ Sbjct: 244 TGYGLCVLPYFIASKYPELVPVLPREMHLVREYWMSCHVDVMAAPRIRVISDFM 297 >PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 159/301 (52%), Gaps = 15/301 (4%) Query: 7 NWNDLRIFLEVARGTLSGAAAKLRVXAGTLSGAAAKLRVDHSTISRRIAQLEAVLNAPVF 66 +WNDLR FLE+ R +G L AA +L H+T++R I +E L +F Sbjct: 3 DWNDLRFFLELQR-------------SGRLLTAAKRLGTTHATVARHIENIERDLGTQLF 49 Query: 67 ERDHQGFHITVKGRELLEHVEAMESGALAIGESLSGTSRIPSGPVRIATMEGIASLYLSR 126 + G+ +T G+ LL+H EAME+ AL E +S S P G +RI EG+ S++L+ Sbjct: 50 AQHTGGYQLTPAGQALLKHAEAMENTALLAQEEMS-QSISPLGQIRIGVTEGLGSVFLAP 108 Query: 127 QFVSFKERYPLIQIELVTSTQLVHVSQREADVFLSFFPSEGKGLEVEPVGAFPLHLYASE 186 + YP +++ELV+ + V ++ READ+ +S + + + L L+AS Sbjct: 109 RLAQLMRHYPGLEVELVSVPRFVSITNREADIAISLDRPSADLVITRLLTRYRLALFASP 168 Query: 187 SYLARHGVPGSVGELRDHQFVSYVDDLIQLNTVRWLEEAIKNPQVVFHSSSMIAQLFSAA 246 +YL + +L HQ++ YVDDL+ + + ++PQVVF S+S++AQ +A Sbjct: 169 AYLEQAPPLRDRDDLGRHQWIGYVDDLLFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQ 228 Query: 247 EGGGIVMLPAFSNAERFGLRALLVDQIDVKRTIWMTVHRERCFMPRIKAVQQFIKDILAR 306 G G+ +LP F + R L ++ + ++R WM+ RE R++ V F+ ++ R Sbjct: 229 AGIGLAILPHFMGS-RDPLLVPVLPEESIQREYWMSTRRELHRSVRLRVVWDFLLELCQR 287 Query: 307 D 307 + Sbjct: 288 E 288 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 14/298 (4%) Query: 7 NWNDLRIFLEVARGTLSGAAAKLRVXAGTLSGAAAKLRVDHSTISRRIAQLEAVLNAPVF 66 NW+D+R+FL VAR G + A+ +L ++H+T+SRR+ LE L A + Sbjct: 2 NWDDVRVFLAVAR-------------TGQILAASKRLGINHATLSRRVTALEEELKAKLL 48 Query: 67 ERDHQGFHITVKGRELLEHVEAMESGALAIGESLSGTSRIPSGPVRIATMEGIASLYLSR 126 R G +T +G E ME+ LA + +G VRI +G +L+ Sbjct: 49 IRRPNGCELTAEGEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAP 108 Query: 127 QFVSFKERYPLIQIELVTSTQLVHVSQREADVFLSFFPSEGKGLEVEPVGAFPLHLYASE 186 + RYP ++++LV + +SQREAD+ ++ E L + + L LYAS Sbjct: 109 RLGRLTARYPELKLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASA 168 Query: 187 SYLARHGVPGSVGELRDHQFVSYVDDLIQLNTVRWLEEAIKNPQVVFHSSSMIAQLFSAA 246 YL R+G PG+V +L++H+ + YV+DLI ++ + E +++ F SS + Q + Sbjct: 169 EYLGRYGTPGTVDDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVR 228 Query: 247 EGGGIVMLPAFSNAERFGLRALLVDQIDVKRTIWMTVHRERCFMPRIKAVQQFIKDIL 304 GI +L + + L LL D+ ++R W T H + R++ V F+++++ Sbjct: 229 SSAGIGILHNYIARQYPELVRLLPDRT-IRRAYWTTYHESARDLVRVRTVAAFLQEMV 285