BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0033.p (313 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas ae... 282 8e-76 mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium... 266 4e-71 PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella mu... 253 6e-67 VC0289 [K] COG1609 Transcriptional regulators Vch Vibrio cholerae 238 1e-62 YPO3955 [K] COG1609 Transcriptional regulators Ype Yersinia pestis 226 5e-59 >PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 343 Score = 282 bits (721), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 150/314 (47%), Positives = 199/314 (63%), Gaps = 1/314 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 +T SRAL+ V +E ++ A +LGYV N AA LASA+S + VLVPSL N +FI Sbjct: 30 ITASRALRGVASVAEELAQKVRDAARELGYVANPAARALASAQSHSVAVLVPSLANLLFI 89 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 ETL I L G + LIG YS+ +E LI YLA+ P G LL+ ++ + RR + Sbjct: 90 ETLEAIHAVLRPQGLEVLIGNFHYSRNEEEDLIRNYLAYQPRGLLLTGFERTESARRMIE 149 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 A+ IP V M DL + VGFSQ +AG AAA HL+ RG RR A++ AQLD R + R E Sbjct: 150 ASGIPCVYMMDLDSGSGLNCVGFSQLRAGEAAAEHLLARGRRRLAYIGAQLDQRTLLRGE 209 Query: 181 GFRKGLSEAGL-DPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFE 239 GFR+ L +AG DP +E+L P P++V +G +L ++L P D VF CNDDLA GAL E Sbjct: 210 GFRRALQKAGCYDPGLEILTPRPSSVALGGELFVQLLASQPQVDGVFFCNDDLAQGALLE 269 Query: 240 CQRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKA 299 RRG+KVP+Q+A+ GFNDL + C P +++I TPR IG +AAE L+ + G+ V + Sbjct: 270 ALRRGVKVPEQIAVLGFNDLPGSDCTVPRLSSIRTPREAIGRRAAEQLLALIAGKEVRDS 329 Query: 300 RLDLGFELAVREST 313 LD+GFEL REST Sbjct: 330 ALDMGFELMAREST 343 >mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti Length = 344 Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 142/314 (45%), Positives = 189/314 (60%), Gaps = 1/314 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 +TVSRAL+ PE V +E R +I AA+ +LGYVP+ A LASAR++V GVLVPSLTN VF Sbjct: 29 ITVSRALREPERVSEELRRQIQAAVDELGYVPDPNARALASARAEVFGVLVPSLTNNVFA 88 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 E + GI D LS + ++ +G T YS +E RL+ + + P +++ DQ R+ L Sbjct: 89 EVVRGIYDSLSDSPFRIQLGNTHYSGLEEERLLQLFGSQRPAALIVAGIDQTPTSRKLLE 148 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 A P V++ + G DM VGFS G A HLIE GYRR F+ A++DPR +R Sbjct: 149 NAGCPVVQVMETGPDPVDMMVGFSHFDGGRTATEHLIEAGYRRIGFIGARMDPRSQRRLA 208 Query: 181 GFRKGLSEAGL-DPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFE 239 G+R + + GL DP + P ++V +G +L L P D VFC NDD+ALG LFE Sbjct: 209 GYRAAMEKPGLFDPRLVTTTPLLSSVPLGRELFRDALAKMPTLDGVFCNNDDIALGVLFE 268 Query: 240 CQRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKA 299 C R I VP+ + I GFNDL A PSIT+I T RY+IG +A M + + G E+ Sbjct: 269 CHRAAIDVPKTIGIVGFNDLDMMQVAFPSITSIRTHRYEIGRRAVAMALSAIAGNRPEQR 328 Query: 300 RLDLGFELAVREST 313 +DLGFEL REST Sbjct: 329 IVDLGFELKRREST 342 >PM0791 [K] COG1609 Transcriptional regulators Pmu Pasteurella multocida Length = 332 Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 122/312 (39%), Positives = 190/312 (60%), Gaps = 1/312 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MT+SR L+ P+ V E + +IA AI GY+PN+A L++A+S+ IGVLVPSLTN VF Sbjct: 21 MTISRYLRHPDSVAPETQAKIAQAIEHFGYIPNRAPDILSNAKSRAIGVLVPSLTNQVFA 80 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 + + GI +AGYQ ++ GYS EKE + I + L++ DG +LS + + + L Sbjct: 81 DVIKGIELVSDKAGYQTMLAHYGYSMEKEEQRIESLLSYHVDGLILSENQHSERTLKMLE 140 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 ANIP V + + + ++GF A A +I RG++ + +A++D R + + Sbjct: 141 VANIPVVEIMECSEVGIQQAIGFDNIAAAQAMVETMIHRGHKNVVYFSARMDKRTCLKMQ 200 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 G+ + + + GL P + P++ +GAQ L L+ P+ D +FC NDDLA+GALFEC Sbjct: 201 GYEQAMKKHGLQP-YSLTTEQPSSFSLGAQQLHDALQQRPNLDGIFCTNDDLAIGALFEC 259 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 QRRGIKVP+Q+AIAGF+ TP + T++TPR +IG A + L+ ++ G P + A Sbjct: 260 QRRGIKVPKQIAIAGFHGHDVGQSMTPQLATVITPRLEIGKIATQELLNRIHGMPQQSAI 319 Query: 301 LDLGFELAVRES 312 ++LG+++ + ES Sbjct: 320 INLGYQIHLGES 331 >VC0289 [K] COG1609 Transcriptional regulators Vch Vibrio cholerae Length = 332 Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 186/312 (59%), Gaps = 1/312 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MTVSR L+SP+ V R++IA A+ LGY+ N+A + L+ + S+ IG+L+PSL+N +F Sbjct: 21 MTVSRYLRSPDSVAAATREKIALAVEALGYIENRAPAMLSKSSSKAIGILLPSLSNQIFA 80 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 + GI GY+ L+ GY +E+E R I++ LA+ DG +L+ S + +A Sbjct: 81 SFVQGIEAVTKANGYETLLAHFGYDEEEEERKIASLLAYQVDGLILTESHHTQRTLQMIA 140 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 ++ +P V +L + DM+VG +A Y A + +I G R A+ A+LD R R + Sbjct: 141 SSGVPVVETMELPANPIDMAVGMDHVEASYQAVKKIIAAGKRSIAYFGARLDTRTKLRMQ 200 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 G+ + + EAGL P VL + ++ + AQLL PD D VFC NDD+A+G L Sbjct: 201 GYDQAMQEAGL-PIKHVLTGSHSSFSLAAQLLDEAFARYPDLDGVFCTNDDIAIGTLLVA 259 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 Q+RGI+VP+Q+++ G+N L TP +T++ +PRY IG K+AE+LI LKGE E+ Sbjct: 260 QQRGIRVPEQLSVIGYNALDIGRTITPKLTSVDSPRYAIGEKSAELLIAALKGERAEQQV 319 Query: 301 LDLGFELAVRES 312 +D+G+ ES Sbjct: 320 VDMGYRFTAGES 331 >YPO3955 [K] COG1609 Transcriptional regulators Ype Yersinia pestis Length = 331 Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 181/307 (58%), Gaps = 1/307 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MTVSR L++PE V +++IA A+ +LGY+PN+A L++A S IGVL+PSLTN VF Sbjct: 20 MTVSRYLRNPEQVSAVLQEKIALALDELGYIPNRAPDILSNATSHAIGVLLPSLTNQVFA 79 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 E L GI GYQ ++ GY KE+E + +++ L++ DG +LS + + Sbjct: 80 EVLRGIESVTDAHGYQTMLAHYGYQKEREEQRLTSLLSYNIDGLILSERHHTARTLKMIE 139 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 A IP + + D D++VGF+ +A + +I +G+R + A+ D R + +++ Sbjct: 140 VAGIPVIELMDCISPCLDLAVGFNNFEAARQMTQQIIAKGHRYVVYFGARQDERTVIKQQ 199 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 G+ + + E+GL P + V+ ++ GA+LL P D++FC NDDLA+GA+FEC Sbjct: 200 GYEQAMRESGLVP-MSVMTSRSSSYSAGAELLREAQVSYPQIDSIFCTNDDLAIGAVFEC 258 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 QR+G+ +P MAIAGF+ P + +++TPR +G AE L+ +L+GE V Sbjct: 259 QRQGLSIPHDMAIAGFHGHDIGQSMVPKLASVLTPRERMGQIGAERLLARLRGEGVTPQM 318 Query: 301 LDLGFEL 307 +D+GF + Sbjct: 319 VDVGFTI 325