BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0028.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0774 [H] COG1179 Dinucleotide-utilizing enzymes involved in m... 301 1e-81 YPO1026 [H] COG1179 Dinucleotide-utilizing enzymes involved in m... 288 8e-78 STM2987 [H] COG1179 Dinucleotide-utilizing enzymes involved in m... 283 3e-76 ygdL [H] COG1179 Dinucleotide-utilizing enzymes involved in moly... 279 6e-75 PM0927 [H] COG1179 Dinucleotide-utilizing enzymes involved in mo... 278 1e-74 >RSc0774 [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Rso Ralstonia solanacearum Length = 300 Score = 301 bits (771), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 158/283 (55%), Positives = 199/283 (70%), Gaps = 15/283 (5%) Query: 14 DIDFDRRFGGIARLYGAQGLARFRAAHICVVGVGGVGSWIVEALARSAIGKITMIDLDNL 73 D ++ RRFGG+ARLYG Q L RF AAHICV+GVGGVGSW+ EALAR IG++T+IDLD++ Sbjct: 16 DDEYARRFGGVARLYGPQALERFAAAHICVIGVGGVGSWVAEALARCGIGRLTLIDLDHI 75 Query: 74 AESNVNRQIHALTDTLGKAKVTALHERIMQINPYCQVTEIEDFLTPDNVAEMIGEGRFDY 133 A SN NRQIHAL D GKAKV A+ ERI +INP +++ I+DF+T +NV ++G FDY Sbjct: 76 AVSNTNRQIHALGDAYGKAKVDAMAERIAEINPRAEISRIDDFVTVENVDALLGH-PFDY 134 Query: 134 VVDAIDNVRAKVALIAYCREHKVPLLTSGGAGGQIDPTRIEIRDLCRTEQEPLLAKVRKR 193 VVDAID V+ K A++A+C+ ++T G AGGQ+DPTRI + DL RT Q+PLLAKVR Sbjct: 135 VVDAIDAVKVKTAIVAFCQRTGTRVVTCGAAGGQLDPTRIRVADLARTIQDPLLAKVRGN 194 Query: 194 LRAWHKFPRGTKNKFGIDAVFSTEPLRFPEGE--VCEVDT---------DD--AADGLDT 240 LR H FPR K +FGIDAV+S EPLR+PE E C V+ DD AA ++ Sbjct: 195 LRRQHGFPRDPKARFGIDAVYSDEPLRYPEPEQQACAVEVPAESSHAGIDDLAAAGAIEV 254 Query: 241 VDADGRKQDA-GVTGLNCAGFGSAMVVTASFGLVAAGFVLRKI 282 V+A Q + G GL CAGFGS++ VTA FG+VAA LR I Sbjct: 255 VNAPPAPQPSRGPQGLACAGFGSSVCVTAVFGMVAASTALRAI 297 >YPO1026 [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Ype Yersinia pestis Length = 275 Score = 288 bits (738), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 140/272 (51%), Positives = 190/272 (69%), Gaps = 20/272 (7%) Query: 17 FDRRFGGIARLYGAQGLARFRAAHICVVGVGGVGSWIVEALARSAIGKITMIDLDNLAES 76 + +RFGGIARLYG Q LA F AH+CV+G+GGVGSW EALAR+ IG IT+ID+D++ + Sbjct: 9 YQQRFGGIARLYGQQALALFSQAHVCVIGIGGVGSWAAEALARTGIGAITLIDMDDVCVT 68 Query: 77 NVNRQIHALTDTLGKAKVTALHERIMQINPYCQVTEIEDFLTPDNVAEMIGEGRFDYVVD 136 N NRQIHAL +G+AK + ERI+ INP C VT I+DF+T DNVAE++ + F YV+D Sbjct: 69 NTNRQIHALRHNIGQAKTEVMAERILAINPECHVTCIDDFITADNVAELLNK-NFSYVID 127 Query: 137 AIDNVRAKVALIAYCREHKVPLLTSGGAGGQIDPTRIEIRDLCRTEQEPLLAKVRKRLRA 196 AID+VR K AL++YCR +K+P++T+GGAGGQIDPTRI + DL +T Q+PL AK+R+RL++ Sbjct: 128 AIDSVRPKAALLSYCRRYKIPVVTTGGAGGQIDPTRIAVVDLAKTIQDPLAAKLRERLKS 187 Query: 197 WHKFPRGTKNKFGIDAVFSTEPLRFPE--GEVCEVDTDDAADGLDTVDADGRKQDAGVTG 254 + +K K GID VFS+EPL +P+ G VC R G Sbjct: 188 DFNVVKNSKGKLGIDCVFSSEPLVYPQADGSVCA----------------SRSTAEGPKK 231 Query: 255 LNC-AGFGSAMVVTASFGLVAAGFVLRKIVER 285 ++C +GFGSA +VTA+FG VA VL+K++ + Sbjct: 232 MDCTSGFGSATMVTATFGFVAVSHVLKKMMAK 263 >STM2987 [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Sty Salmonella typhimurium LT2 Length = 268 Score = 283 bits (725), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 146/272 (53%), Positives = 191/272 (70%), Gaps = 20/272 (7%) Query: 17 FDRRFGGIARLYGAQGLARFRAAHICVVGVGGVGSWIVEALARSAIGKITMIDLDNLAES 76 + +RFGG ARLYG + L RF AHICVVG+GGVGSW EALAR+ IG IT+ID+D++ + Sbjct: 9 WRQRFGGTARLYGEKALQRFAEAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVT 68 Query: 77 NVNRQIHALTDTLGKAKVTALHERIMQINPYCQVTEIEDFLTPDNVAEMIGEGRFDYVVD 136 N NRQIHAL D +G AK + ERI QINP C+VT I+DF+TPDNVA + G F YV+D Sbjct: 69 NTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVIDDFITPDNVAGYMNAG-FTYVID 127 Query: 137 AIDNVRAKVALIAYCREHKVPLLTSGGAGGQIDPTRIEIRDLCRTEQEPLLAKVRKRLRA 196 AID+VR K ALIAYCR +KVPL+T+GGAGGQIDPT+I++ DL +T Q+PL AK+R+RL+ Sbjct: 128 AIDSVRPKAALIAYCRRYKVPLVTTGGAGGQIDPTQIQVADLAKTIQDPLAAKLRERLKH 187 Query: 197 WHKFPRGTKNKFGIDAVFSTEPLRFPE--GEVCEVDTDDAADGLDTVDADGRKQDAGVTG 254 + +K K G+D VFSTE L +P+ G VC + A+G K+ Sbjct: 188 NFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKA----------TAEGPKR------ 231 Query: 255 LNCA-GFGSAMVVTASFGLVAAGFVLRKIVER 285 ++CA GFG+A +VTA+FG VA L+KI+ + Sbjct: 232 MDCASGFGAATMVTATFGFVAVSHALKKIMAK 263 >ygdL [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Eco Escherichia coli K12 Length = 268 Score = 279 bits (713), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 141/272 (51%), Positives = 192/272 (70%), Gaps = 20/272 (7%) Query: 17 FDRRFGGIARLYGAQGLARFRAAHICVVGVGGVGSWIVEALARSAIGKITMIDLDNLAES 76 + +RFGG ARLYG + L F AHICVVG+GGVGSW EALAR+ IG IT+ID+D++ + Sbjct: 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVT 68 Query: 77 NVNRQIHALTDTLGKAKVTALHERIMQINPYCQVTEIEDFLTPDNVAEMIGEGRFDYVVD 136 N NRQIHAL D +G AK + ERI QINP C+VT ++DF+TPDNVA+ + G + YV+D Sbjct: 69 NTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVG-YSYVID 127 Query: 137 AIDNVRAKVALIAYCREHKVPLLTSGGAGGQIDPTRIEIRDLCRTEQEPLLAKVRKRLRA 196 AID+VR K ALIAYCR +K+PL+T+GGAGGQIDPT+I++ DL +T Q+PL AK+R+RL++ Sbjct: 128 AIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKS 187 Query: 197 WHKFPRGTKNKFGIDAVFSTEPLRFPE--GEVCEVDTDDAADGLDTVDADGRKQDAGVTG 254 + +K K G+D VFSTE L +P+ G VC + A+G K+ Sbjct: 188 DFGVVKNSKGKLGVDCVFSTEALVYPQSDGTVCAMKA----------TAEGPKR------ 231 Query: 255 LNCA-GFGSAMVVTASFGLVAAGFVLRKIVER 285 ++CA GFG+A +VTA+FG VA L+K++ + Sbjct: 232 MDCASGFGAATMVTATFGFVAVSHALKKMMAK 263 >PM0927 [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Pmu Pasteurella multocida Length = 258 Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/269 (49%), Positives = 187/269 (69%), Gaps = 23/269 (8%) Query: 16 DFDRRFGGIARLYGAQGLARFRAAHICVVGVGGVGSWIVEALARSAIGKITMIDLDNLAE 75 ++++RFGGIARLY +GL R + +H+CV+G+GGVGSW VEALARS +GK+T+ID+D++ Sbjct: 11 NYEQRFGGIARLYSTEGLTRLKQSHVCVIGIGGVGSWCVEALARSGVGKLTLIDMDDICV 70 Query: 76 SNVNRQIHALTDTLGKAKVTALHERIMQINPYCQVTEIEDFLTPDNVAEMIGEGRFDYVV 135 +N+NRQIHAL+ +G+ K + R+ INP C+V I+DF++ +N+A+ + +G +DYV+ Sbjct: 71 TNINRQIHALSGNIGQLKTEVMKARVALINPECEVAIIDDFISSENLADYLSKG-YDYVI 129 Query: 136 DAIDNVRAKVALIAYCREHKVPLLTSGGAGGQIDPTRIEIRDLCRTEQEPLLAKVRKRLR 195 DAID+V+ K ALIAYC+ HK+ ++T GGAGGQ DPT+I+I DL RT Q+PLLAKVR LR Sbjct: 130 DAIDHVKTKAALIAYCKRHKINMITVGGAGGQTDPTQIQITDLSRTIQDPLLAKVRSLLR 189 Query: 196 AWHKFPRGTKNKFGIDAVFSTEPLRFPEGEVCEVDTDDAADGLDTVDADGRKQDAGVTGL 255 + F + K KFGID VFST+PL FP DG V A + Sbjct: 190 KEYHFSQNPKRKFGIDCVFSTQPLIFPN-----------VDGNCEVSAS----------M 228 Query: 256 NCA-GFGSAMVVTASFGLVAAGFVLRKIV 283 NCA GFG+A +VTA+FG A V+ K++ Sbjct: 229 NCANGFGAATMVTATFGFFAVSRVINKLL 257