BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0015.p (342 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2712 [J] COG0809 S-adenosylmethionine Rso Ralstonia solanacearum 477 e-134 VC0739 [J] COG0809 S-adenosylmethionine Vch Vibrio cholerae 399 e-111 PA3824 [J] COG0809 S-adenosylmethionine Pae Pseudomonas aeruginosa 395 e-110 NMB1859 [J] COG0809 S-adenosylmethionine Nme Neisseria meningiti... 390 e-108 YPO3192 [J] COG0809 S-adenosylmethionine Ype Yersinia pestis 382 e-106 >RSc2712 [J] COG0809 S-adenosylmethionine Rso Ralstonia solanacearum Length = 362 Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/341 (68%), Positives = 275/341 (80%), Gaps = 5/341 (1%) Query: 1 MYSLSDFDFDLPPGLIAQLPLAERSASRLL----QVDGATLTDRRFADVVDLLAPGDLLV 56 M +LSDFDFDLPP LIAQ L +R+ASRLL G DR+FAD+VD L PGDLLV Sbjct: 7 MLTLSDFDFDLPPELIAQTALPDRTASRLLAARHDAQGTHFDDRQFADLVDYLRPGDLLV 66 Query: 57 FNNTRVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTV 116 FN+TRV+KARFFG K +GGK+EVLVER+LD +V AQ+R+SKSP GS +RLADAFDVTV Sbjct: 67 FNDTRVIKARFFGHKASGGKIEVLVERLLDEHTVLAQIRSSKSPVAGSTLRLADAFDVTV 126 Query: 117 GERYGEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTA 176 G R+ F+TL+FP L+EQYG LPLPPYIEH D FDETRYQTVYA+ PGAVAAPTA Sbjct: 127 GPRHEPFFTLRFPQPALELIEQYGRLPLPPYIEHTPDSFDETRYQTVYARTPGAVAAPTA 186 Query: 177 GLHFDEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVR 236 GLHFD+AL A+L A G+ F+TLHVGAGTF PVRVE+++EH+MHSEWY I+ + + +R Sbjct: 187 GLHFDDALFARLDAMGVRRGFLTLHVGAGTFSPVRVENIAEHRMHSEWYAISPDLAEAIR 246 Query: 237 AVKAAGGKIVAVGTTSMRALESASQA-GALEAGSADTKLFITPGYTFKTVDRLITNFHLP 295 A +A GG+IVAVGTTSMRALESA+Q G L AGS +T +FITPGY F+ VD L+TNFHLP Sbjct: 247 ATRAVGGRIVAVGTTSMRALESAAQPDGTLAAGSGETDIFITPGYRFRLVDALVTNFHLP 306 Query: 296 KSTLLMLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 KSTLLMLVSAFAG + IRAAY HAIAQ+YRFFSYGDAM LT Sbjct: 307 KSTLLMLVSAFAGLETIRAAYRHAIAQRYRFFSYGDAMFLT 347 >VC0739 [J] COG0809 S-adenosylmethionine Vch Vibrio cholerae Length = 352 Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/345 (57%), Positives = 261/345 (75%), Gaps = 13/345 (3%) Query: 3 SLSDFDFDLPPGLIAQLPLAERSASRLLQVDGAT--LTDRRFADVVDLLAPGDLLVFNNT 60 +SDF F+LP LIA+ P AER+ASRLLQ+DG + L D F DV++L+ PGDLLVFNNT Sbjct: 2 QVSDFHFELPDELIARYPKAERTASRLLQLDGNSGQLVDGTFKDVLELVEPGDLLVFNNT 61 Query: 61 RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLA--DAFDVTVGE 118 RV+ AR FG K +GGK+EVLVER+LD ++ A VR+SK P PG+ + L D F + Sbjct: 62 RVIPARMFGRKASGGKLEVLVERMLDEHTILAHVRSSKPPKPGTELYLGENDEFHAVMQA 121 Query: 119 RYGEFYTLQFPSD--VFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTA 176 R+ + ++F ++ V +L Q G +PLPPYI+ +E D+ RYQTVY ++PGAVAAPTA Sbjct: 122 RHDALFEIRFTAETVVLDILNQIGHMPLPPYIDRPDEEADKERYQTVYNQKPGAVAAPTA 181 Query: 177 GLHFDEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVR 236 GLHFD+ALL Q+QAKG++ A+VTLHVGAGTFQPVRVE++ +H MH+E+ + QE VD + Sbjct: 182 GLHFDQALLEQIQAKGVELAYVTLHVGAGTFQPVRVENIHDHHMHAEYVEVPQEVVDAIT 241 Query: 237 AVKAAGGKIVAVGTTSMRALESASQAGALEAGS------ADTKLFITPGYTFKTVDRLIT 290 A KA GG++VAVGTTS+R+LESA+Q AL+ G+ DT++FI PGY ++ VD LIT Sbjct: 242 ATKARGGRVVAVGTTSVRSLESAAQ-DALQKGTELKPFFGDTEIFIFPGYQYQLVDCLIT 300 Query: 291 NFHLPKSTLLMLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLL 335 NFHLP+STL+MLVSAFAGY++ AAY HA+ +QYRFFSYGDAM + Sbjct: 301 NFHLPESTLIMLVSAFAGYEHTMAAYEHAVKEQYRFFSYGDAMFI 345 >PA3824 [J] COG0809 S-adenosylmethionine Pae Pseudomonas aeruginosa Length = 347 Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/335 (61%), Positives = 248/335 (74%), Gaps = 2/335 (0%) Query: 4 LSDFDFDLPPGLIAQLPLAERSASRLLQVDG--ATLTDRRFADVVDLLAPGDLLVFNNTR 61 ++DF FDLP LIA+ PL ER ASRLL +DG TL R+FAD++D L PGDL+VFNNTR Sbjct: 3 VADFHFDLPEALIARHPLPERRASRLLALDGPTGTLAHRQFADLLDYLRPGDLMVFNNTR 62 Query: 62 VLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERYG 121 V+ AR FG KE+GGK+EVLVERVLD V A +RASK+P PG+RI + + +R+ Sbjct: 63 VIPARLFGQKESGGKLEVLVERVLDQHRVLAHIRASKAPKPGTRILVEGGGSAEMLQRHD 122 Query: 122 EFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHFD 181 + L F V LLE+ G +PLPPYI+ D D RYQTVYA+ GAVAAPTAGLHFD Sbjct: 123 ALFELAFAEPVLPLLERVGHMPLPPYIDRPDDAADRERYQTVYAQRAGAVAAPTAGLHFD 182 Query: 182 EALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKAA 241 EALL ++AKG+DTAFVTLHVGAGTFQPVRVE + +H MH EW + Q+ VD V +A Sbjct: 183 EALLEAIRAKGVDTAFVTLHVGAGTFQPVRVERIEDHVMHREWLEVGQDVVDAVSVCRAR 242 Query: 242 GGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLLM 301 GG++VAVGTTS+R+LESA++ G L+ S DT +FI PG F VD L+TNFHLP+STLLM Sbjct: 243 GGRVVAVGTTSVRSLESAARDGELKPFSGDTDIFIYPGRPFHVVDALVTNFHLPESTLLM 302 Query: 302 LVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 LVSAFAGY AAYA A+AQ YRFFSYGDAM +T Sbjct: 303 LVSAFAGYPETMAAYAAAVAQGYRFFSYGDAMFIT 337 >NMB1859 [J] COG0809 S-adenosylmethionine Nme Neisseria meningitidis MC58 Length = 346 Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/337 (62%), Positives = 249/337 (73%), Gaps = 6/337 (1%) Query: 4 LSDFDFDLPPGLIAQLPLAERSASRLL-QVDGATLTDRRFADVVDLLAPGDLLVFNNTRV 62 +SDFDF LP LIAQ P R +SRLL + L DR F D+ D + GD+LVFNNT+V Sbjct: 3 ISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGDLPDYVEAGDVLVFNNTKV 62 Query: 63 LKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFD-VTVGERYG 121 +KAR FG K++GG++E L+ERVLDN + A +R+SKSP PG + VTVG R G Sbjct: 63 MKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKPGMGLVFEGGIRAVTVG-REG 121 Query: 122 EFYTLQFPSD--VFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLH 179 E + L+F V+ LLEQ G LPLPPYIE AAD D++RYQTVYAK GAVAAPTAGLH Sbjct: 122 ELFCLRFEGGETVYELLEQNGHLPLPPYIERAADADDDSRYQTVYAKYQGAVAAPTAGLH 181 Query: 180 FDEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVK 239 F E LL +L+ KG TA VTLHVGAGTFQPVRV+ + EHKMHSEW+ + ET V A K Sbjct: 182 FTEELLHRLKDKGAVTAEVTLHVGAGTFQPVRVDKIEEHKMHSEWFEVPSETAAAVEAAK 241 Query: 240 AAGGKIVAVGTTSMRALESASQA-GALEAGSADTKLFITPGYTFKTVDRLITNFHLPKST 298 A G K+ AVGTTSMRALESA++A G L+AG DT +FITPGY F VDRL+TNFHLPKST Sbjct: 242 ARGNKVWAVGTTSMRALESAARATGRLKAGQGDTDIFITPGYRFNVVDRLVTNFHLPKST 301 Query: 299 LLMLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLL 335 LLMLVSAF+G +IRAAY HA+ ++YRFFSYGDAM+L Sbjct: 302 LLMLVSAFSGMGHIRAAYRHAVEREYRFFSYGDAMVL 338 >YPO3192 [J] COG0809 S-adenosylmethionine Ype Yersinia pestis Length = 356 Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/342 (57%), Positives = 248/342 (72%), Gaps = 9/342 (2%) Query: 4 LSDFDFDLPPGLIAQLPLAERSASRLLQVDG--ATLTDRRFADVVDLLAPGDLLVFNNTR 61 ++DF F+LP LIA P +RS RLL +DG TLT F D++D LAPGDLLVFNNTR Sbjct: 3 VADFSFELPEALIAHYPQPQRSGCRLLSLDGPTGTLTHGIFTDLLDKLAPGDLLVFNNTR 62 Query: 62 VLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLAD--AFDVTVGER 119 V+ AR FG K +GGK+EVLVERVLD+ V A V+ASK+P PG+ + L D + T+ R Sbjct: 63 VIPARLFGRKASGGKLEVLVERVLDDHRVLAHVKASKAPKPGAELLLGDDESIRATMLAR 122 Query: 120 YGEFYTLQF--PSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAG 177 + + L+F DVF +L G +PLPPYI+ ++ D YQTVY++ PGAVAAPTAG Sbjct: 123 HDTLFELRFDDERDVFTILNAVGHMPLPPYIDRPDEDADRELYQTVYSQRPGAVAAPTAG 182 Query: 178 LHFDEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRA 237 LHFDE +LA LQ KGI+ AFVTLHVGAGTFQPVRV+ + +H MHSE+ + QE VD V A Sbjct: 183 LHFDEPMLAALQEKGIEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQEVVDAVLA 242 Query: 238 VKAAGGKIVAVGTTSMRALESASQA---GALEAGSADTKLFITPGYTFKTVDRLITNFHL 294 KA G ++VAVGTTS+R+LESA++A G + DT++FI PGY ++ VD L+TNFHL Sbjct: 243 CKARGKRVVAVGTTSVRSLESAAKAAENGLIAPFFGDTRIFIYPGYHYQVVDALVTNFHL 302 Query: 295 PKSTLLMLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336 P+STL+MLVSAFAGY N AY A+A+QYRFFSYGDAM ++ Sbjct: 303 PESTLIMLVSAFAGYKNTMNAYQQAVAEQYRFFSYGDAMFIS 344