BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0014.p (620 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2711 [LK] COG1200 RecG-like helicase Rso Ralstonia solanacearum 728 0.0 NMB1788 [LK] COG1200 RecG-like helicase Nme Neisseria meningitid... 602 e-172 NMA0675 [LK] COG1200 RecG-like helicase NmA Neisseria meningitid... 602 e-172 PM0919 [LK] COG1200 RecG-like helicase Pmu Pasteurella multocida 530 e-150 PA5345 [LK] COG1200 RecG-like helicase Pae Pseudomonas aeruginosa 527 e-149 >RSc2711 [LK] COG1200 RecG-like helicase Rso Ralstonia solanacearum Length = 671 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/562 (66%), Positives = 440/562 (78%), Gaps = 11/562 (1%) Query: 55 LHLPLRYEDETQVMSIHDASLRGTQ--VVQVEGVVSKSDVQFRPRRQLVVTITDDSGPLV 112 LHLP+RYEDET +++I +A R QV+GVV++++V FRPRRQLVV I DDSG LV Sbjct: 2 LHLPMRYEDETALLTIAEAVARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELV 61 Query: 113 MRFLNFYGSQATQLAEGVRVRVRGELRHGFFGAEMVHPAYKVVLEGAPLPTALTPVYPAG 172 +RFLNFYGSQ Q+AEG R+RVRGE+R GFFGAEMVHPA + V PLP LTPVYP+ Sbjct: 62 LRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAVRAVTPDEPLPDRLTPVYPST 121 Query: 173 EGLSQAYLRKAIGGALSRLDWRDTLPPAIL----AEHKLDGFEASVRQLHNPPTDVDEYA 228 G++QAYLRKAI AL R +TLP ++L A KL +VR LH P DVDE++ Sbjct: 122 AGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS 181 Query: 229 LEERSHPAWIRMKFDELLAQQLSLKRAQAARRARNASALPTIG--NISKAFIKQLPFKLT 286 L ER+HPAW+R+KFDELLAQQLSLKRAQAARR R+A L G + F+ LPFKLT Sbjct: 182 LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLT 241 Query: 287 AAQQRVLEEIRHDLQESFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVLMAPTEILA 346 AQ RV EEIR DL +PMQRLLQGDVGSGKTV+AA+AA QAID+G QA LMAPTE+LA Sbjct: 242 GAQARVWEEIRADLARPYPMQRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLA 301 Query: 347 DQHFRKIAAWMEPLGVKVAWLTGSLKKKEKAAANALIESGEARLVIGTHALIQDNVQFRK 406 +QH+RK++AW+ PLGV + WL GSLK+K+K A A + +G A+LVIGTHALIQD V F + Sbjct: 302 EQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAGTAQLVIGTHALIQDTVTFAR 361 Query: 407 LGLVIVDEQHRFGVGQRLALRNKARDDTAGDADIDAAPQTVPHQLMMSATPIPRTLAMTY 466 LGL +VDEQHRFGV QRLALR KA D + Q VPHQLMMSATPIPRTLAMTY Sbjct: 362 LGLAVVDEQHRFGVAQRLALRGKA---GGTDTPVAETAQLVPHQLMMSATPIPRTLAMTY 418 Query: 467 YADLEVSVIDELPPGRTPIVTRTIDQNRRDEVIARVHAAAQEGRQVYWVCPLIEESEALQ 526 YADL+VS IDELPPGRTP+VTR ++ RRDEVI R+HAAA+EGRQVYWVCPLIEESEALQ Sbjct: 419 YADLDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQ 478 Query: 527 LQTATDTYSMLAEALPDLRIGLVHGRLKQAEKQDVMDAFSRGEIHVLVATTVIEVGVDVP 586 LQTA +T+ L+++L L++GLVHGRL A+K VM AF+ GE+HVLVATTVIEVGVDVP Sbjct: 479 LQTAVETFETLSQSLAGLKVGLVHGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVP 538 Query: 587 NASLMVIEHAERFGLSQLHQLR 608 NASLMVIEHAERFGL+QLHQLR Sbjct: 539 NASLMVIEHAERFGLAQLHQLR 560 >NMB1788 [LK] COG1200 RecG-like helicase Nme Neisseria meningitidis MC58 Length = 680 Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust. Identities = 323/577 (55%), Positives = 397/577 (68%), Gaps = 19/577 (3%) Query: 40 NKLAKLGLRSDMDLALHLPLRYEDETQVMSIHDASLRGTQVVQVEGVVSKSDVQFRPRRQ 99 KL KL L + DL LHLPLRYEDET +M I DA + G QVEG V +V F+PR+Q Sbjct: 18 KKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPI-GVPC-QVEGEVIHQEVTFKPRKQ 75 Query: 100 LVVTITDDSGP-LVMRFLNFYGSQATQLAEGVRVRVRGELRHGFFGAEMVHPAYKVVLEG 158 L+V I D SG L +RF++FY S Q A G R+R GE++HGF+G EM+HP + EG Sbjct: 76 LIVQIADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIRDA-EG 134 Query: 159 APLPTALTPVYPAGEGLSQAYLRKAIGGALSRLDWRDTLPPAILAEHKLDGFEASVRQLH 218 L +LTPVYP GL+Q LR+ I AL DTLP A+L KL S+R LH Sbjct: 135 GGLAESLTPVYPTVNGLNQPTLRRIIQTALDVTPLHDTLPDALLCRLKLPHLAESLRLLH 194 Query: 219 NPPTDVDEYALEERSHPAWIRMKFDELLAQQLSLKRAQAARRARNASALPTIGNISKAFI 278 +PP + L + + PAW R+KFDELLAQQLS++ A+ R A+AL G +++A Sbjct: 195 SPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALR 254 Query: 279 KQLPFKLTAAQQRVLEEIRHDLQESFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVL 338 + LPF LT AQ++V+ EI D+ +++PM RLLQGDVGSGKT+VAA++A AI+SG Q + Sbjct: 255 QALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAV 314 Query: 339 MAPTEILADQHFRKIAAWMEPLGVKVAWLTGSLKKKEKAAANALIESGEARLVIGTHALI 398 MAPTEILA+QHF K W+EPLG++V L GSL+KK K A A + G ++ +GTHAL Sbjct: 315 MAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALF 374 Query: 399 QDNVQFRKLGLVIVDEQHRFGVGQRLALRNKARDDTAGDADIDAAPQTVPHQLMMSATPI 458 D V F LGL IVDEQHRFGV QRLAL+NK R+ HQLMMSATPI Sbjct: 375 SDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGRE---------------VHQLMMSATPI 419 Query: 459 PRTLAMTYYADLEVSVIDELPPGRTPIVTRTIDQNRRDEVIARVHAAAQEGRQVYWVCPL 518 PRTLAM+++ADL+VSVIDELPPGRTPI TR ++ RR EV V ++GRQ YWVCPL Sbjct: 420 PRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPL 479 Query: 519 IEESEALQLQTATDTYSMLAEALPDLRIGLVHGRLKQAEKQDVMDAFSRGEIHVLVATTV 578 IEESE LQLQTA +T + L ALP+L IGLVHGR+K AEK +VM FS G ++VLVATTV Sbjct: 480 IEESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTV 539 Query: 579 IEVGVDVPNASLMVIEHAERFGLSQLHQLRXGAQPGA 615 IEVGVDVPNA+LMVIEHAER GL+QLHQLR GA Sbjct: 540 IEVGVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGA 576 >NMA0675 [LK] COG1200 RecG-like helicase NmA Neisseria meningitidis Z2491 Length = 680 Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust. Identities = 323/577 (55%), Positives = 397/577 (68%), Gaps = 19/577 (3%) Query: 40 NKLAKLGLRSDMDLALHLPLRYEDETQVMSIHDASLRGTQVVQVEGVVSKSDVQFRPRRQ 99 KL KL L + DL LHLPLRYEDET +M I DA + G QVEG V +V F+PR+Q Sbjct: 18 KKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPI-GVPC-QVEGEVIHQEVTFKPRKQ 75 Query: 100 LVVTITDDSGP-LVMRFLNFYGSQATQLAEGVRVRVRGELRHGFFGAEMVHPAYKVVLEG 158 L+V I D SG L +RF++FY S Q A G R+R GE++HGF+G EM+HP + EG Sbjct: 76 LIVQIADGSGSVLFLRFIHFYASHQKQTAIGKRIRAVGEIKHGFYGDEMIHPKIRDA-EG 134 Query: 159 APLPTALTPVYPAGEGLSQAYLRKAIGGALSRLDWRDTLPPAILAEHKLDGFEASVRQLH 218 L +LTPVYP GL+Q LR+ I AL DTLP A+L KL S+R LH Sbjct: 135 GGLAESLTPVYPTVNGLNQPTLRRIIQTALDVTPLHDTLPDALLCRLKLPHLAESLRLLH 194 Query: 219 NPPTDVDEYALEERSHPAWIRMKFDELLAQQLSLKRAQAARRARNASALPTIGNISKAFI 278 +PP + L + + PAW R+KFDELLAQQLS++ A+ R A+AL G +++A Sbjct: 195 SPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALR 254 Query: 279 KQLPFKLTAAQQRVLEEIRHDLQESFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQAVL 338 + LPF LT AQ++V+ EI D+ +++PM RLLQGDVGSGKT+VAA++A AI+SG Q + Sbjct: 255 QALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAV 314 Query: 339 MAPTEILADQHFRKIAAWMEPLGVKVAWLTGSLKKKEKAAANALIESGEARLVIGTHALI 398 MAPTEILA+QHF K W+EPLG++V L GSL+KK K A A + G ++ +GTHAL Sbjct: 315 MAPTEILAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALF 374 Query: 399 QDNVQFRKLGLVIVDEQHRFGVGQRLALRNKARDDTAGDADIDAAPQTVPHQLMMSATPI 458 D V F LGL IVDEQHRFGV QRLAL+NK R+ HQLMMSATPI Sbjct: 375 SDGVAFHNLGLTIVDEQHRFGVAQRLALKNKGRE---------------VHQLMMSATPI 419 Query: 459 PRTLAMTYYADLEVSVIDELPPGRTPIVTRTIDQNRRDEVIARVHAAAQEGRQVYWVCPL 518 PRTLAM+++ADL+VSVIDELPPGRTPI TR ++ RR EV V ++GRQ YWVCPL Sbjct: 420 PRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPL 479 Query: 519 IEESEALQLQTATDTYSMLAEALPDLRIGLVHGRLKQAEKQDVMDAFSRGEIHVLVATTV 578 IEESE LQLQTA +T + L ALP+L IGLVHGR+K AEK +VM FS G ++VLVATTV Sbjct: 480 IEESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGGLNVLVATTV 539 Query: 579 IEVGVDVPNASLMVIEHAERFGLSQLHQLRXGAQPGA 615 IEVGVDVPNA+LMVIEHAER GL+QLHQLR GA Sbjct: 540 IEVGVDVPNAALMVIEHAERMGLAQLHQLRGRVGRGA 576 >PM0919 [LK] COG1200 RecG-like helicase Pmu Pasteurella multocida Length = 693 Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust. Identities = 296/584 (50%), Positives = 375/584 (64%), Gaps = 19/584 (3%) Query: 40 NKLAKLGLRSDMDLALHLPLRYEDETQVMSIHDASLRGTQVVQVEGVVSKSDVQFRPRRQ 99 +KL ++G+ + DL HLP+RYED T++ IHD LR +EG+V +VQF R Sbjct: 23 DKLGRIGIHNLQDLLFHLPIRYEDRTRITPIHD--LRPDAYATIEGLVQTCEVQFGKRPI 80 Query: 100 LVVTITDDSGPLVMRFLNFYGSQATQLAEGVRVRVRGELRHGFFGAEMVHPAYKVVLEGA 159 L V+++D + +++RF NF L G RV+ GE++ G F AE+ HP Y+++ + A Sbjct: 81 LNVSLSDGTSKIMLRFFNFNAGMKNSLQPGARVKAFGEVKRGRFMAEIHHPEYQIIRDNA 140 Query: 160 PL--PTALTPVYPAGEGLSQAYLRKAIGGALSRLDWRDT--LPPAILAEHKLDGFEASVR 215 PL LTP+Y EG+ Q LRK AL+ L+ + P H EA +R Sbjct: 141 PLILEETLTPIYSTTEGIKQNSLRKLTDQALAVLENIQIAEILPNEFNPHPFSLKEA-IR 199 Query: 216 QLHNPPTDVDEYALEERSHPAWIRMKFDELLAQQLSLKRAQAARRARNASALPTIGNISK 275 LH PP DV ALE+ +HPA R+ F+ELLA L++++ + + +A L ++ + Sbjct: 200 FLHRPPPDVSLEALEKGTHPAQQRLIFEELLAHNLAMQKVRIGTQQFSAYPLSYQTDLKQ 259 Query: 276 AFIKQLPFKLTAAQQRVLEEIRHDLQESFPMQRLLQGDVGSGKTVVAAIAAAQAIDSGFQ 335 F+ QLPF T AQ RV +EI DL FPM RL+QGDVGSGKT+VAA+AA AID+G Q Sbjct: 260 RFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQ 319 Query: 336 AVLMAPTEILADQHFRKIAAWMEPLGVKVAWLTGSLKKKEKAAANALIESGEARLVIGTH 395 LMAPTEILA+QH W E LG++V WL G +K K + I +G+ ++V+GTH Sbjct: 320 VALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGKARQTELEKIRTGQVQMVVGTH 379 Query: 396 ALIQDNVQFRKLGLVIVDEQHRFGVGQRLALRNKARDDTAGDADIDAAPQTVPHQLMMSA 455 AL QD V+F L LVIVDEQHRFGV QRL LR K + AD PHQL+M+A Sbjct: 380 ALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGK-----QAD------HYPHQLIMTA 428 Query: 456 TPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRTIDQNRRDEVIARV-HAAAQEGRQVYW 514 TPIPRTLAMT YADL+ S+IDELPPGRTPI T I + RR EVIARV HA E RQ YW Sbjct: 429 TPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEKRQAYW 488 Query: 515 VCPLIEESEALQLQTATDTYSMLAEALPDLRIGLVHGRLKQAEKQDVMDAFSRGEIHVLV 574 VC LI+ESE L+ Q A L + LP LRIGLVHGR+K AEKQD+M AF + EI +LV Sbjct: 489 VCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLV 548 Query: 575 ATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRXGAQPGADAA 618 ATTVIEVGVDVPNASLM+IE+AER GLSQLHQLR G A+ Sbjct: 549 ATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTAS 592 >PA5345 [LK] COG1200 RecG-like helicase Pae Pseudomonas aeruginosa Length = 691 Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust. Identities = 299/587 (50%), Positives = 388/587 (66%), Gaps = 25/587 (4%) Query: 40 NKLAKLGLRSDMDLALHLPLRYEDETQVMSIHDASLRGTQVVQVEGVVSKSDVQFRPRRQ 99 KLA++GL + D+ HLPLRY+D T+V +I +LR VEGVV+ +DV RR Sbjct: 21 EKLARVGLETLQDILFHLPLRYQDRTRVTAI--GALRPGADAVVEGVVAGADVVMGRRRS 78 Query: 100 LVVTITDDSGPLVMRFLNFYGSQATQLAEGVRVRVRGELRHGFFGAEMVHPAYKVVLEGA 159 L+V + D SG L +RF +F +Q L G +R GE+R G G E+ HP Y+ + Sbjct: 79 LLVRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDE 138 Query: 160 PLPT--ALTPVYPAGEGLSQAYLRKAIGGALSRL------DWRDTLPPAILAEHKLDGFE 211 P+P LTP+YP EGL+Q LR+ AL+ L DW LP + +++L + Sbjct: 139 PIPVEQTLTPIYPTTEGLTQQRLRQLSQQALAMLGPSSLPDW---LPAELARDYQLGPLD 195 Query: 212 ASVRQLHNPPTDVDEYALEERSHPAWIRMKFDELLAQQLSLKRAQAARRARNASALPTIG 271 ++R LH PP D D L E H A +R+ F+ELL QLSL+R + A R++ A LP Sbjct: 196 QAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLREAVRSQAAPRLPAAS 255 Query: 272 NISKAFIKQLPFKLTAAQQRVLEEIRHDLQESFPMQRLLQGDVGSGKTVVAAIAAAQAID 331 + K F+ L F+ T AQ+RV EI +DL + PM RL+QGDVG+GKTVVAA+AA QAI+ Sbjct: 256 RLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIE 315 Query: 332 SGFQAVLMAPTEILADQHFRKIAAWMEPLGVKVAWLTGSLKKKEKAAANALIESGEARLV 391 +G+Q LMAPTEILA+QHF + W++PL ++VAWL G LK K +AAA I G A +V Sbjct: 316 AGYQVALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDG-APMV 374 Query: 392 IGTHALIQDNVQFRKLGLVIVDEQHRFGVGQRLALRNKARDDTAGDADIDAAPQTVPHQL 451 +GTHAL QD V+F++L L I+DEQHRFGV QRLALR K D + PHQL Sbjct: 375 VGTHALFQDEVKFKRLALAIIDEQHRFGVQQRLALRQKGVDG-----------RLCPHQL 423 Query: 452 MMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRTIDQNRRDEVIARVHAAAQEGRQ 511 +M+ATPIPRTLAM+ YADL+ S++DELPPGRTP+ T + +RR EVI RV AA +EGRQ Sbjct: 424 IMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACREGRQ 483 Query: 512 VYWVCPLIEESEALQLQTATDTYSMLAEALPDLRIGLVHGRLKQAEKQDVMDAFSRGEIH 571 YWVC LIEESE L Q A TY L+ AL +LR+GL+HGR+K A+K VM+AF G + Sbjct: 484 AYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQ 543 Query: 572 VLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRXGAQPGADAA 618 +LVATTVIEVGVDVPNASLM+IE+ ER GL+QLHQLR G+ A+ Sbjct: 544 LLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAAS 590