BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0007.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation ... 221 1e-57 PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation o... 200 2e-51 CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation o... 143 3e-34 SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation... 141 9e-34 AGc918 [NT] COG1871 Chemotaxis protein stimulates methylation o... 135 5e-32 >RSp1404 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Rso Length = 233 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 100/183 (54%), Positives = 143/183 (78%), Gaps = 2/183 (1%) Query: 9 ASHVYHDRNFNCDTAKILPGEYYHTHHDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPD 68 ++H Y+D F+ K+LPGEYY T D+M+VTVLGSCVSAC+RD++ GIGGMNHFMLP Sbjct: 38 STHAYYDTTFSRRAMKVLPGEYYVTTEDLMLVTVLGSCVSACVRDKLLGIGGMNHFMLPS 97 Query: 69 GGNDADSPISSSMRYGTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVGERN 128 N+++S +S SMRYGT+AME+L+N++ ++GA+RE+LE KVFGG AVL G + ++VGERN Sbjct: 98 R-NESESILSPSMRYGTHAMEVLLNQLYRAGARREHLEIKVFGGAAVLAGMSTLDVGERN 156 Query: 129 AAFVRTYLRTEGIRVVAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDAATEM-KERDYAGK 187 FV +LR+EG+ V A+DL D+ PRKV++ P +G+++V+KL+S +A E+ E YA K Sbjct: 157 GKFVLEFLRSEGLPVAAKDLFDVHPRKVYFVPSTGQIMVRKLRSQGSAAELDSEAQYASK 216 Query: 188 LAK 190 L++ Sbjct: 217 LSR 219 >PA0174 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Pae Length = 200 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 134/189 (70%), Gaps = 3/189 (1%) Query: 13 YHDRNFNCDTAKILPGEYYHTHHDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPDGGND 72 Y+D F CD K+LPGEY+ + D++IVTVLGSCVS C+RD ++GI GMNHFMLP+ G Sbjct: 14 YYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMNHFMLPERGLG 73 Query: 73 ADSPISSSMRYGTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVGERNAAFV 132 D P S S RYG++AME+LIN +L GA RE L++KVFGGG+VLR +A +G+RN F Sbjct: 74 GD-PASPSARYGSHAMELLINRMLALGASRERLQAKVFGGGSVLRQISAA-IGQRNVEFT 131 Query: 133 RTYLRTEGIRVVAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDAATEM-KERDYAGKLAKK 191 YL TE I ++A D+ + +PRK+++FPR+G+VLVK L T + +ERDY ++ + Sbjct: 132 LDYLATERIPLLASDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRERDYRRRIDRN 191 Query: 192 PVGGEIDLF 200 GG IDLF Sbjct: 192 ADGGPIDLF 200 >CC0438 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Ccr Length = 187 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 117/192 (60%), Gaps = 13/192 (6%) Query: 13 YHDRNFNCDTAKILPGEYYHT-HHDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPDGGN 71 +HD + GE + T ++++ TVLGSC++ACIRD SG+GGMNHF+LPD G+ Sbjct: 5 HHDDPERAVKVHVTQGESHVTADPNVVMTTVLGSCIAACIRDPQSGVGGMNHFLLPDSGD 64 Query: 72 ---DADSPISSSMRYGTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVGERN 128 D D ++RYG YAME+LIN++LK GA+RE LE+K+FGG + G + +VG N Sbjct: 65 GRRDGD-----AVRYGAYAMEVLINDLLKRGARRERLEAKIFGGAKLFDGLS--DVGASN 117 Query: 129 AAFVRTYLRTEGIRVVAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDAATEMKERDYAGKL 188 AAF +LR EGI +V+ + R+V ++P SG+V ++L + D A + R + Sbjct: 118 AAFAERFLRDEGIPIVSSSTGGVSARRVEFWPASGRVR-QRLVAVDNAPQDVRRPTPPPM 176 Query: 189 AKKPVGGEIDLF 200 G++DLF Sbjct: 177 PAV-ASGDVDLF 187 >SMc03012 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Sme Length = 183 Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 110/172 (63%), Gaps = 6/172 (3%) Query: 25 ILPGEYYHTHH-DMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPDGGNDADSPISSSMRY 83 ++ GE+ + D+++ T+LGSCV+AC+RD +G+GGMNHF+LP G + S + + RY Sbjct: 12 VIQGEFKVVNDPDIVLSTILGSCVAACMRDPAAGVGGMNHFLLP-GSATSPSSGADATRY 70 Query: 84 GTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVGERNAAFVRTYLRTEGIRV 143 G + ME+LIN +LK GA+R+ LE+K+FGG + F+ NVGE+NAAF R +L EGIR+ Sbjct: 71 GVHLMELLINGLLKQGARRDRLEAKIFGGARTIARFS--NVGEQNAAFARQFLMDEGIRI 128 Query: 144 VAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDA--ATEMKERDYAGKLAKKPV 193 V E RK+ Y+P SG+ L +A A +M +R K A+ P+ Sbjct: 129 VGESTGGDHGRKLEYWPSSGRARQYALTGVEAQRALQMDQRPAVPKPAESPI 180 >AGc918 [NT] COG1871 Chemotaxis protein stimulates methylation of MCP proteins Atu Length = 181 Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 11/179 (6%) Query: 25 ILPGEY-YHTHHDMMIVTVLGSCVSACIRDRVSGIGGMNHFMLPDGGNDADSPISSSMRY 83 I+ GEY + D+++ T+LGSCV+AC+RD V+G+GGMNHF+LP GN + RY Sbjct: 11 IIQGEYKVVSDPDVVMTTILGSCVAACLRDPVAGLGGMNHFLLPGTGNVTG---GDATRY 67 Query: 84 GTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVGERNAAFVRTYLRTEGIRV 143 G + ME+LIN +LK GA+R+ LE+KVFGG + F+ NVGE+NA F +L+ EGI V Sbjct: 68 GVHLMELLINGLLKQGARRDRLEAKVFGGAKTIASFS--NVGEQNAIFAMQFLKDEGIPV 125 Query: 144 VAEDLNDIWPRKVHYFPRSGKVLVKKLK--STDAATEMKERDYAGKLAKKPVGGEIDLF 200 ++ RK+ ++P SG+ L T M+ R A KPV +I+ F Sbjct: 126 ISSSTGGDHGRKIEFWPVSGRARQHPLSGAETQKTVAMETRPVP---APKPVANDIEFF 181