BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0006.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae       96   4e-20
mll4894 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    95   8e-20
YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis      94   2e-19
gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12    92   7e-19
ZgcvA [K] COG0583 Transcriptional regulator EcZ Escherichia coli...    92   7e-19

>VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae
          Length = 306

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 63/92 (68%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          +R LP LN+L+ FEAAARH SFT AA+EL VTQ AVSHQ+KALEE LG+ LF R +  L 
Sbjct: 2  SRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLL 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQLLERPQR 94
          LT  GQ Y +   + F  +   T +LLER ++
Sbjct: 62 LTEEGQSYFLDIKDIFSSLAEATDKLLERSEK 93


>mll4894 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 324

 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 6  LPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLRLTA 65
          LP LN LRAFEA ARH S T AA EL+VT GAVSHQ+KALE+ LGV LFER+  ++RLT 
Sbjct: 5  LPPLNPLRAFEATARHGSLTKAASELNVTHGAVSHQIKALEQSLGVKLFERIGQRVRLTP 64

Query: 66 AGQRYLVVAGEAFDRIESGTRQLLERP 92
           G   L     AFD I + T Q L RP
Sbjct: 65 HGAELLPAVSTAFDGIAAAT-QRLTRP 90


>YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis
          Length = 305

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          ++ LP LNALRAF+AAARH SFT AA+EL VTQ AVSHQ+K+LE+ LG+ LF R +  L 
Sbjct: 2  SKRLPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLL 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQLLER 91
          LT  GQ Y +   E F  I   TR+L  R
Sbjct: 62 LTEEGQSYYLDIKEIFTSINEATRKLQAR 90


>gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12
          Length = 305

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          ++ LP LNALR F+AAARH SFT AA+EL VTQ AVSHQ+K+LE+ LG+ LF R +  L 
Sbjct: 2  SKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLL 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQLLER 91
          LT  GQ Y +   E F ++   TR+L  R
Sbjct: 62 LTEEGQSYFLDIKEIFSQLTEATRKLQAR 90


>ZgcvA [K] COG0583 Transcriptional regulator EcZ Escherichia coli
          O157:H7 EDL933
          Length = 305

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%)

Query: 3  ARTLPSLNALRAFEAAARHQSFTLAAQELHVTQGAVSHQVKALEEELGVPLFERLSNQLR 62
          ++ LP LNALR F+AAARH SFT AA+EL VTQ AVSHQ+K+LE+ LG+ LF R +  L 
Sbjct: 2  SKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLL 61

Query: 63 LTAAGQRYLVVAGEAFDRIESGTRQLLER 91
          LT  GQ Y +   E F ++   TR+L  R
Sbjct: 62 LTEEGQSYFLDIKEIFSQLTEATRKLQAR 90