BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0005.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02103 [J] COG0251 Putative translation initiation inhibitor, ...   125   3e-29
AGc2535 [J] COG0251 Putative translation initiation inhibitor, y...   117   9e-27
BMEI0820 [J] COG0251 Putative translation initiation inhibitor, ...   114   1e-25
mlr0658 [J] COG0251 Putative translation initiation inhibitor, y...   112   4e-25
ML2304 [J] COG0251 Putative translation initiation inhibitor, yj...   107   7e-24

>SMc02103 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Sme Sinorhizobium meliloti
          Length = 154

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 3   LDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIEDA 62
           ++ RLTELGIVLP + AP A Y   VV   + +ISGQLP +  +V V+G +G++V +  A
Sbjct: 5   IETRLTELGIVLPQAVAPVANYVPYVVSGSMLYISGQLPMENGKVAVTGHVGKDVDVAGA 64

Query: 63  RMGARAALIRALAALRDTVGDLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYELFG 122
           +  A    I  LA  +  +G+L RI +++++N +V ST DF +Q  V +GAS L+  + G
Sbjct: 65  QRAAELCAINILAQAKAALGELGRIRRLVKINGFVASTPDFVEQHLVINGASNLLANVLG 124

Query: 123 PEQGRHARTSVGVAQLPRNAAVELDIVVAL 152
            E G+HAR +VG+A LP NAAVE+D V+ +
Sbjct: 125 -EAGKHARAAVGMASLPFNAAVEIDAVIEI 153


>AGc2535 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 156

 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 2/151 (1%)

Query: 3   LDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIEDA 62
           ++ RL ELG  LP +AAP A Y    +   L ++SGQLP +  ++ V+G +GR+V +  A
Sbjct: 5   IEGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASA 64

Query: 63  RMGARAALIRALAALRDTV-GDLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYELF 121
           +  A    +  LA ++  + GDL +I ++++LN +V S  +F +Q  V +GAS LI  + 
Sbjct: 65  QRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVL 124

Query: 122 GPEQGRHARTSVGVAQLPRNAAVELDIVVAL 152
           G E GRHAR +VG+A LP NA+VE+D +V +
Sbjct: 125 G-EPGRHARAAVGMASLPFNASVEIDAIVEI 154


>BMEI0820 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Bme Brucella melitensis
          Length = 154

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 93/149 (62%), Gaps = 1/149 (0%)

Query: 2   NLDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIED 61
            ++ RL  LGI +P +AAP A Y        L   SGQLP +  +++ +G +G+E+++ D
Sbjct: 4   TIENRLKNLGISIPQAAAPAANYVPFAQSDSLLLTSGQLPLENCKLVHTGLIGKELTVAD 63

Query: 62  ARMGARAALIRALAALRDTVGDLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYELF 121
            +  ARA  I  LA  +  +G+L RI +I+++ V+V S   F +Q  VA+GAS L+  + 
Sbjct: 64  GQAAARACAINVLAQAKAALGELDRIKRIVKITVFVASAPGFVEQHLVANGASDLLVAVL 123

Query: 122 GPEQGRHARTSVGVAQLPRNAAVELDIVV 150
           G + G+HAR++VGVA LP NA VE++ ++
Sbjct: 124 G-DAGKHARSAVGVASLPLNAPVEVEAII 151


>mlr0658 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Mlo Mesorhizobium loti
          Length = 154

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 2   NLDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIED 61
            +++RL++LG+ LP +AAP A Y        L + +GQLP    ++  SG LGR+V    
Sbjct: 4   TIEKRLSDLGVTLPVAAAPAANYVPYCRSGNLLFTAGQLPLKDGKLQASGLLGRDVDTAS 63

Query: 62  ARMGARAALIRALAALRDTVGDLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYELF 121
            +  A+   I  LA  R  +GDL++I +++++ V+V S  DF +Q  VA+GAS  +    
Sbjct: 64  GKEAAKYCAINILAQARAALGDLEKISRLVKITVFVASAPDFVEQHLVANGASDFLVAAL 123

Query: 122 GPEQGRHARTSVGVAQLPRNAAVELDIV 149
           G E+G+HAR++VG   LP NAAVE++ +
Sbjct: 124 G-ERGKHARSAVGTTSLPLNAAVEIEAI 150


>ML2304 [J] COG0251 Putative translation initiation inhibitor, yjgF family
           Mle Mycobacterium leprae
          Length = 174

 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 99/153 (64%), Gaps = 2/153 (1%)

Query: 1   MNLDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIE 60
           M++  RL +LGI LP +A P A Y + V    L + SGQLP +  R+  +GK+G +VS+ 
Sbjct: 24  MSVLARLGQLGIELPQAAPPLASYVSAVRTGNLVYTSGQLPIEDGRLPQTGKVGADVSLG 83

Query: 61  DARMGARAALIRALAALRDTVGDLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYEL 120
           + +  AR   + ALAA+   VG L  +  ++++  +V S+  F+ Q +V +GAS L  E+
Sbjct: 84  EGKALARICALNALAAVDSLVG-LDSVTGVVKVVGFVASSSGFNGQPSVVNGASDLFAEV 142

Query: 121 FGPEQGRHARTSVGVAQLPRNAAVELDIVVALG 153
           FG ++GRHAR++VGVA+LP  A VE++++V LG
Sbjct: 143 FG-DRGRHARSAVGVAELPLGAPVEIELIVELG 174