BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0003.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1266 [G] COG0395 ABC-type sugar transport system, permease co... 347 1e-95 SMb20418 [G] COG0395 ABC-type sugar transport system, permease c... 338 5e-93 AGl3246 [G] COG0395 ABC-type sugar transport system, permease co... 338 6e-93 ZugpE [G] COG0395 ABC-type sugar transport system, permease comp... 334 1e-91 ECs4297 [G] COG0395 ABC-type sugar transport system, permease co... 334 1e-91 >RSc1266 [G] COG0395 ABC-type sugar transport system, permease component Rso Ralstonia solanacearum Length = 282 Score = 347 bits (891), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 186/284 (65%), Positives = 235/284 (82%), Gaps = 3/284 (1%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIERRP LD ++HLVLI+G ++V FP+YV F+AS+ TAE +P++L+PG L+ NY+ Sbjct: 1 MIERRPFLDVLTHLVLILGVVVVAFPVYVVFVASSLTAEDVLQAPMTLIPGPHLIDNYRE 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 VL G GN ++P V ML SL+ AL I++GKI+IS++SAFA+VYFRF R FFW+IF Sbjct: 61 VLAHGM-GNAATP-VGTMLMNSLIMALGISLGKIAISIISAFAIVYFRFPLRKTFFWLIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 VTLMLPVEVRI PTY+VVSD GMLN+Y GLT+P+IASATATFLFRQFFLT+PDELAEAAR Sbjct: 119 VTLMLPVEVRILPTYKVVSDLGMLNSYFGLTIPIIASATATFLFRQFFLTIPDELAEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGAGPL+F DV+ PLSRT++ ALFVI FIYGWNQYLWPL++ TE+ M PI +G+ +I Sbjct: 179 IDGAGPLKFFWDVVLPLSRTSIAALFVIQFIYGWNQYLWPLLVTTERDMTPIVLGVTQMI 238 Query: 241 S-GGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 S GDSA +WN++MAT++LAM+PP LVV+ MQ+WFVKGLV++EK Sbjct: 239 SRSGDSATDWNLLMATVMLAMVPPVLVVIGMQRWFVKGLVETEK 282 >SMb20418 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 282 Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 164/283 (57%), Positives = 216/283 (76%), Gaps = 1/283 (0%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIE+RPI + + HL+LIIG IIV+FP+Y F+AS+ ++ + P+ L+PGT L NY Sbjct: 1 MIEKRPISNLIGHLMLIIGIIIVVFPIYYTFVASSMSSVEIIRPPMPLVPGTRLAENYSE 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 L+ G V + R+L+ + V A+ IA+GKI IS LSAFA+V+FRF R FFWMIF Sbjct: 61 ALSGGVE-RVVGVSLERLLFNTFVVAIAIAVGKIVISFLSAFAIVFFRFPLRMAFFWMIF 119 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PTY+V+ D G+++TYAGLT+PL+ASATATFLFRQFFLT+P EL EAAR Sbjct: 120 ITLMLPVEVRILPTYKVIVDLGLIDTYAGLTLPLMASATATFLFRQFFLTIPGELVEAAR 179 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 ID AGP RF++D+L PLS+TN+ ALFVI+FIYGW QYLWPL++ + M I IG++ ++ Sbjct: 180 IDNAGPFRFMRDILLPLSKTNIAALFVILFIYGWTQYLWPLLVTNDSRMNTIIIGLRKMV 239 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 D++ WN VM T ILA++PP VVV+MQ+WFVKGLV++EK Sbjct: 240 DFTDASTPWNYVMVTAILAIIPPVAVVVLMQRWFVKGLVETEK 282 >AGl3246 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 282 Score = 338 bits (868), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 170/283 (60%), Positives = 214/283 (75%), Gaps = 1/283 (0%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIE RPI ++HL+L++G IIV FP+Y FIAS+ T+ P+SLLPG L ANY Sbjct: 1 MIENRPIARVIAHLMLVLGIIIVAFPIYYTFIASSMTSNDIIRPPMSLLPGDHLSANYTE 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 + G V + R+L+ S V AL IAIGKI IS LSAFA+V+FRF R FFWMIF Sbjct: 61 AMVGGVERVVGVS-LERLLFNSFVVALAIAIGKIVISFLSAFAIVFFRFPFRMGFFWMIF 119 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PTY+V+ D G+++TYAGLT+PL+ASATATFLFRQFFLT+P EL EAAR Sbjct: 120 ITLMLPVEVRILPTYKVIVDLGLIDTYAGLTLPLMASATATFLFRQFFLTIPGELVEAAR 179 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 ID AGP RF++D+L PLSRTN+ ALFVI+FIYGW QYLWPL++ + M I IG+K ++ Sbjct: 180 IDNAGPFRFMRDILLPLSRTNIAALFVILFIYGWTQYLWPLLVTNDAKMNTIIIGLKRMV 239 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 D++ WN VM T ILA++PP +VVV+MQ+WFVKGLV++EK Sbjct: 240 DFTDASTPWNYVMVTAILAIIPPVMVVVLMQRWFVKGLVETEK 282 >ZugpE [G] COG0395 ABC-type sugar transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 281 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 165/283 (58%), Positives = 215/283 (75%), Gaps = 2/283 (0%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIE RP L SH +LI+G +++FPLYVAF+A+T + +P++L+PGT L+ N Sbjct: 1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 + G N S P RML S V A I +GKI++SMLSAFA+V+FRF RNLFFWMIF Sbjct: 61 IWVNGVGTN--SAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PT +V+++ ML++YAGLT+PL+ASATATFLFRQFF+T+PDEL EAAR Sbjct: 119 ITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGA P+RF D+++PLS+TN+ ALFVI FIYGWNQYLWPL+I T+ + GIK +I Sbjct: 179 IDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMI 238 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 + G+ EWN VMA M+L ++PP ++V+VMQ+ FV+GLVDSEK Sbjct: 239 ATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281 >ECs4297 [G] COG0395 ABC-type sugar transport system, permease component Ecs Escherichia coli O157:H7 Length = 281 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 165/283 (58%), Positives = 215/283 (75%), Gaps = 2/283 (0%) Query: 1 MIERRPILDAVSHLVLIIGAIIVIFPLYVAFIASTQTAEQSAMSPLSLLPGTELVANYKT 60 MIE RP L SH +LI+G +++FPLYVAF+A+T + +P++L+PGT L+ N Sbjct: 1 MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAAPMTLIPGTHLLENIHN 60 Query: 61 VLTQGASGNVSSPPVSRMLWISLVTALVIAIGKISISMLSAFAMVYFRFRGRNLFFWMIF 120 + G N S P RML S V A I +GKI++SMLSAFA+V+FRF RNLFFWMIF Sbjct: 61 IWVNGVGTN--SAPFWRMLLNSFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIF 118 Query: 121 VTLMLPVEVRITPTYQVVSDFGMLNTYAGLTVPLIASATATFLFRQFFLTVPDELAEAAR 180 +TLMLPVEVRI PT +V+++ ML++YAGLT+PL+ASATATFLFRQFF+T+PDEL EAAR Sbjct: 119 ITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAAR 178 Query: 181 IDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLMIATEQTMYPIGIGIKTLI 240 IDGA P+RF D+++PLS+TN+ ALFVI FIYGWNQYLWPL+I T+ + GIK +I Sbjct: 179 IDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWPLLIITDVDLGTTVAGIKGMI 238 Query: 241 SGGDSAVEWNMVMATMILAMLPPGLVVVVMQKWFVKGLVDSEK 283 + G+ EWN VMA M+L ++PP ++V+VMQ+ FV+GLVDSEK Sbjct: 239 ATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGLVDSEK 281