BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0002.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1265 [G] COG1175 ABC-type sugar transport systems, permease c... 362 e-100 SMb20417 [G] COG1175 ABC-type sugar transport systems, permease ... 322 9e-88 YPO3795 [G] COG1175 ABC-type sugar transport systems, permease c... 303 5e-82 AGl3247 [G] COG1175 ABC-type sugar transport systems, permease c... 299 6e-81 ugpA [G] COG1175 ABC-type sugar transport systems, permease comp... 291 1e-78 >RSc1265 [G] COG1175 ABC-type sugar transport systems, permease components Rso Ralstonia solanacearum Length = 293 Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/270 (65%), Positives = 221/270 (81%) Query: 1 VEKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAA 60 +EKR F S WLPY LVAPQI +T++FFFWPA QALYQS+L QDAFG +FV +NFA Sbjct: 1 MEKRVVFRSRWLPYVLVAPQIAVTLVFFFWPAGQALYQSLLRQDAFGMNLDFVGLENFAD 60 Query: 61 LFGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVV 120 LF DP+YL +F TTA+F++ VAV G+ SL LA FADR ++GAA YK LIWPYAV+P V Sbjct: 61 LFADPTYLGSFRTTAVFAIGVAVVGLSTSLALAYFADRALRGAAFYKMLLIWPYAVAPAV 120 Query: 121 VGVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGL 180 GVLW FL +PSLG++S V+ +G++WN+++NG QA+ L+V+ A WKQISYNFLFFLAGL Sbjct: 121 AGVLWSFLFNPSLGIVSFVIRRMGVDWNFVLNGGQALLLVVVIAAWKQISYNFLFFLAGL 180 Query: 181 QSIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGG 240 QSIPKSLIEAAAIDGAGP KRF++I+FP++SPTTFFLMVVN+VYAFFDTFAI+++ T GG Sbjct: 181 QSIPKSLIEAAAIDGAGPWKRFWSIVFPLLSPTTFFLMVVNVVYAFFDTFAIIDSVTQGG 240 Query: 241 PGKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 P K TE LV+KV+ DG +G D+G +AA +V Sbjct: 241 PFKATETLVFKVYQDGVRGLDIGGSAAQSV 270 >SMb20417 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 293 Score = 322 bits (824), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 159/268 (59%), Positives = 208/268 (77%) Query: 3 KRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAALF 62 +R F + LPY LVAPQI++TI+FFFWPA QALYQSV+ +D FG S FV F NF+A+ Sbjct: 2 QRVVFPNKILPYLLVAPQIVLTIVFFFWPASQALYQSVIREDPFGLKSGFVGFANFSAVL 61 Query: 63 GDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVVVG 122 + +YL + T IFSVL A+ M ++L+LA ADRVV+G Y+T LIWPYAV+P V G Sbjct: 62 SEANYLNSLKVTVIFSVLTALLAMGVALLLATAADRVVRGKTFYRTLLIWPYAVAPAVAG 121 Query: 123 VLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGLQS 182 +LW+F+ +P++G +++L G +W+ ++NGN AM LIV+AA WKQISYNFLFF+AGLQ+ Sbjct: 122 MLWLFMFNPAMGTFAYMLRRNGFHWDPLLNGNHAMILIVVAAAWKQISYNFLFFVAGLQA 181 Query: 183 IPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGGPG 242 IPKSLIEAAAIDGA +RF+TIIFP+++PTTFFL+VVN VYAFFDTF I+ + T GGP Sbjct: 182 IPKSLIEAAAIDGARGTRRFWTIIFPLLAPTTFFLLVVNTVYAFFDTFGIIHSVTGGGPA 241 Query: 243 KDTEILVYKVFSDGFKGGDLGSAAAXAV 270 + TE LVYKV++DGF +LGS+AA +V Sbjct: 242 RATETLVYKVYNDGFVNLNLGSSAAQSV 269 >YPO3795 [G] COG1175 ABC-type sugar transport systems, permease components Ype Yersinia pestis Length = 295 Score = 303 bits (775), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 157/268 (58%), Positives = 200/268 (74%) Query: 3 KRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAALF 62 R F+ SWLPY LV PQ+ IT +FF WPA +AL+ SV D FG SEFV NF LF Sbjct: 4 SRPGFSCSWLPYLLVLPQLAITAIFFLWPAGEALWYSVQTLDPFGLSSEFVGLSNFIQLF 63 Query: 63 GDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVVVG 122 D YLA+F TT IFS LVA G+++SL LA + V++G+ +Y+T LI PYAV+P V Sbjct: 64 QDEYYLASFYTTLIFSALVAGIGLIVSLFLAAMVNYVLRGSRLYQTLLILPYAVAPAVAA 123 Query: 123 VLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGLQS 182 VLW+FL P LGL++H LA LG +WN+ N QAM L+V+A++WKQISYNFLFFLA LQS Sbjct: 124 VLWIFLFDPGLGLITHALAKLGYSWNHAQNSGQAMFLVVLASVWKQISYNFLFFLAALQS 183 Query: 183 IPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGGPG 242 IPKSL+EAAAIDGAGPV+RFF ++ P+ISP +FFL+VVN+VYAFFDTF +++A T GGP Sbjct: 184 IPKSLVEAAAIDGAGPVRRFFNLVLPLISPVSFFLLVVNLVYAFFDTFPVIDAATGGGPV 243 Query: 243 KDTEILVYKVFSDGFKGGDLGSAAAXAV 270 + T L+YK++ +GF G DL S+AA +V Sbjct: 244 QATTTLIYKIYREGFAGLDLSSSAAQSV 271 >AGl3247 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 329 Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 158/264 (59%), Positives = 205/264 (77%) Query: 7 FTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAALFGDPS 66 F + LPY LVAPQI++T++FFFWPA QALYQS + +DAFG S FV NF+A+ D S Sbjct: 42 FPNKILPYLLVAPQIILTVIFFFWPASQALYQSTMREDAFGLSSNFVGLANFSAVLSDES 101 Query: 67 YLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVVVGVLWM 126 YL + T IFSVL A+ M L+L+LA ADRVV+G Y+T +I PYAV+P V G+LW+ Sbjct: 102 YLNSLKVTVIFSVLTALVSMGLALLLATAADRVVRGKGFYRTMMIMPYAVAPAVAGMLWL 161 Query: 127 FLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGLQSIPKS 186 F+ +P++G LS++L GI W+ +++GNQAM L+V AA WKQISYNFLFF+AGLQ+IPKS Sbjct: 162 FMFNPAMGTLSYILRRNGIMWDPLLDGNQAMLLVVAAAAWKQISYNFLFFVAGLQAIPKS 221 Query: 187 LIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGGPGKDTE 246 L+EAA+IDGA +RF+TI+FP+++PTTFFL+VVN VYAFFDTF I+ A T GGP K TE Sbjct: 222 LLEAASIDGARGSRRFWTIVFPLLAPTTFFLLVVNTVYAFFDTFGIIHAVTGGGPAKATE 281 Query: 247 ILVYKVFSDGFKGGDLGSAAAXAV 270 LVYKV++DGF +LGS+AA +V Sbjct: 282 TLVYKVYNDGFVNLNLGSSAAQSV 305 >ugpA [G] COG1175 ABC-type sugar transport systems, permease components Eco Escherichia coli K12 Length = 295 Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/269 (54%), Positives = 194/269 (72%) Query: 2 EKRARFTSSWLPYALVAPQILITILFFFWPAVQALYQSVLLQDAFGGYSEFVWFDNFAAL 61 R F S WLPY LVAPQ++IT++FF WPA +AL+ S+ D FG S+FV DNF L Sbjct: 3 SSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVTL 62 Query: 62 FGDPSYLAAFGTTAIFSVLVAVGGMVLSLILAVFADRVVKGAAIYKTFLIWPYAVSPVVV 121 F D YL +F TT FS V V G+++SL A + +V+G+ Y+T ++ PYAV+P V Sbjct: 63 FHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVRGSRFYQTLMLLPYAVAPAVA 122 Query: 122 GVLWMFLLSPSLGLLSHVLAWLGINWNYMVNGNQAMTLIVIAAIWKQISYNFLFFLAGLQ 181 VLW+FL +P GL++H LA G +WN+ N QAM L+V A++WKQISYNFLFF A LQ Sbjct: 123 AVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFYAALQ 182 Query: 182 SIPKSLIEAAAIDGAGPVKRFFTIIFPMISPTTFFLMVVNIVYAFFDTFAIVEATTHGGP 241 SIP+SLIEAAAIDGAGP++RFF I P+I+P +FFL+VVN+VYAFFDTF +++A T GGP Sbjct: 183 SIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATSGGP 242 Query: 242 GKDTEILVYKVFSDGFKGGDLGSAAAXAV 270 + T L+YK++ +GF G DL S+AA +V Sbjct: 243 VQATTTLIYKIYREGFTGLDLASSAAQSV 271