BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0731.p (210 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr0535 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 157 2e-38 PA2931 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 154 1e-37 SMb20455 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 145 6e-35 PA2484 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 129 7e-30 AGl3469 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 122 6e-28 >mlr0535 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 204 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 116/201 (57%), Gaps = 1/201 (0%) Query: 5 RGRPRSFDRDEALRLAMQVFWNKGYEGTTMADLTAAIGVKAPSLYAAFGDKNALFREAID 64 RGRPR+FDR ALR AM++FW KGY GT++A+LT A+G+ +PSLYAAFG K ALF EA + Sbjct: 4 RGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLEATE 63 Query: 65 FYSATTAIGPINALKEGKGMREDLHNMLQASVALYADPANGKGCMVVVSAINCAPENAAH 124 +Y+ AL E + + N L+ + Y+ +GC++ + A++ + A Sbjct: 64 YYTQAEGTEIWAALDEAPTACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSSGAI 123 Query: 125 AEEMTVRRQKKRQELAKRFRKAQEQNELSADADIDGLADFYTAVLHGLSLSARDGVSCER 184 ++ RR + L KR + + EL AD D D +A FY V HG+S+ ARDG SC Sbjct: 124 CTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAVATFYATVQHGMSIQARDGASCLA 183 Query: 185 LANTICHAMKALDAVLIAPKK 205 L T+ AM A VL P + Sbjct: 184 LMATVAGAMAAWQ-VLAGPDR 203 >PA2931 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 196 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 116/192 (60%) Query: 4 TRGRPRSFDRDEALRLAMQVFWNKGYEGTTMADLTAAIGVKAPSLYAAFGDKNALFREAI 63 TRGRPR+FDRD AL+ AM VFW +GYEG ++A LT A+ ++ PSLYAAFG K LFREA+ Sbjct: 3 TRGRPRAFDRDTALQRAMDVFWVRGYEGASLAALTEAMEIRPPSLYAAFGSKEGLFREAL 62 Query: 64 DFYSATTAIGPINALKEGKGMREDLHNMLQASVALYADPANGKGCMVVVSAINCAPENAA 123 Y + L RE + +L+ +VA + +GC+VV++A+ PE+ A Sbjct: 63 AHYLGQHGRYRRDVLDGAPSAREGVAELLRETVARFCSDEFPRGCLVVLAALTGTPESEA 122 Query: 124 HAEEMTVRRQKKRQELAKRFRKAQEQNELSADADIDGLADFYTAVLHGLSLSARDGVSCE 183 + ++ R + + +R R+ +L+AD D++ LA FY VL GLS+ A+D V CE Sbjct: 123 VRDALSAERGESIRLFRERMRRGIADGDLAADTDVEELATFYATVLFGLSVQAKDRVPCE 182 Query: 184 RLANTICHAMKA 195 RL + A++A Sbjct: 183 RLLAVVERALRA 194 >SMb20455 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 204 Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 109/191 (57%) Query: 5 RGRPRSFDRDEALRLAMQVFWNKGYEGTTMADLTAAIGVKAPSLYAAFGDKNALFREAID 64 +GRPRSFDR +AL AM+VFW KGYEG ++ LTAA+G+ APSLYAAFG K AL+ EA++ Sbjct: 4 KGRPRSFDRADALMRAMKVFWEKGYEGASLTALTAAMGINAPSLYAAFGCKEALYLEAME 63 Query: 65 FYSATTAIGPINALKEGKGMREDLHNMLQASVALYADPANGKGCMVVVSAINCAPENAAH 124 Y+ T AL+ RE + +L A+ Y+ P GC++ + ++ A A Sbjct: 64 LYAQTVGTEIWAALETAPTAREAVSQILLATAEAYSQPDTPHGCLIALGGLHQAAIPEAV 123 Query: 125 AEEMTVRRQKKRQELAKRFRKAQEQNELSADADIDGLADFYTAVLHGLSLSARDGVSCER 184 E +T R++ +L +R A EL D +A FY V HG+S+ ARDG S E Sbjct: 124 CEALTRHRKENIDKLRQRLEAAIAGGELPDRVDAGAVATFYATVQHGMSILARDGGSYEA 183 Query: 185 LANTICHAMKA 195 L N AM A Sbjct: 184 LKNVTDGAMAA 194 >PA2484 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 204 Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 2/197 (1%) Query: 5 RGRPRSFDRDEALRLAMQVFWNKGYEGTTMADLTAAIG-VKAPSLYAAFGDKNALFREAI 63 RGRP FDR++ALR A+ VFW GYEG TMA L A+G + APS+YAA+G K ALFR A+ Sbjct: 4 RGRPCGFDREQALRRALDVFWEAGYEGVTMAALKEAMGGICAPSMYAAYGSKEALFRSAV 63 Query: 64 DFYSATTAIGPINALKEGKGMREDLHNMLQASVALYADPANGKGCMVVVSAINCAPENAA 123 + Y + A RE + +L+++ Y +GC+V +S N +P N Sbjct: 64 ELYLSQECQLSKGAFALPTA-RESIAALLESAAVSYTTEGKPRGCLVDLSTTNFSPANKG 122 Query: 124 HAEEMTVRRQKKRQELAKRFRKAQEQNELSADADIDGLADFYTAVLHGLSLSARDGVSCE 183 + + R++ + L +RF + ++ A AD+D L FY++VL GLS+ ARDG S + Sbjct: 123 VEDYLRDHRRRAARLLRERFARGVADGDVPAGADLDALTSFYSSVLQGLSIQARDGASRQ 182 Query: 184 RLANTICHAMKALDAVL 200 +L AM A D++L Sbjct: 183 QLLAIGRCAMAAWDSLL 199 >AGl3469 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 219 Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 98/191 (51%) Query: 5 RGRPRSFDRDEALRLAMQVFWNKGYEGTTMADLTAAIGVKAPSLYAAFGDKNALFREAID 64 RGRPR DR+ L +A ++FW +GYEGT++ADLT A+G+ PSLYA FG K LFR A+D Sbjct: 13 RGRPRLLDRNTGLDIAARLFWERGYEGTSIADLTHAMGITPPSLYATFGSKEELFRLALD 72 Query: 65 FYSATTAIGPINALKEGKGMREDLHNMLQASVALYADPANGKGCMVVVSAINCAPENAAH 124 + A + L+ E L L P +GC+V + + + ENA+ Sbjct: 73 HHIAQQSERRAGLLQAKIPAHEALAAYLYDIAEGDTQPDKPRGCIVSTAVLQHSEENASV 132 Query: 125 AEEMTVRRQKKRQELAKRFRKAQEQNELSADADIDGLADFYTAVLHGLSLSARDGVSCER 184 A R+ Q L RF +A EL D D LA FY A++ G+S A DG E Sbjct: 133 ARATAALREGAIQILKARFDRAIHDGELPEQTDTDTLARFYGAIIQGMSAQACDGACTET 192 Query: 185 LANTICHAMKA 195 L + A+ A Sbjct: 193 LKAVVDVALMA 203