BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0730.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0618 Non COG 319 4e-87 rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco... 172 8e-43 ZyaiD [L] COG2974 DNA recombination-dependent growth factor C Ec... 172 9e-43 ECs0445 [L] COG2974 DNA recombination-dependent growth factor C ... 172 9e-43 STM0392 [L] COG2974 DNA recombination-dependent growth factor C ... 166 7e-41 >RSc0618 Non COG Length = 307 Score = 319 bits (817), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 151/254 (59%), Positives = 198/254 (77%) Query: 1 VHVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELL 60 V+ +NRQ LL EKKLLP++V+NQVTKARA E+EEQQGF GRKQ +ELKEQVTDELL Sbjct: 54 VYSINRQMLLVFRAEKKLLPASVVNQVTKARALEVEEQQGFKLGRKQLRELKEQVTDELL 113 Query: 61 PRAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSM 120 PRAF+I R T WID NGWL++DA + ++V LL+K+I + PL ++R SP+++M Sbjct: 114 PRAFTIRRDTRVWIDTANGWLVIDAAAQALGDDVRGLLVKSIDQLPLASVRVALSPVAAM 173 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 TDWL S EAP GFTVDQD ELR+SG+ ATVR+V H LE +D++RHIE+GKQC RLA+TW Sbjct: 174 TDWLLSGEAPGGFTVDQDAELRSSGEGGATVRYVGHALEADDMRRHIEAGKQCVRLAMTW 233 Query: 181 NDRVSFVLTENLSVKKIAPLDVLKEDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 ++R+SFVLT +L++K++ PLDV+KE +D TA+NDDERF+ D LMTGE+ +ML DL++ L Sbjct: 234 DNRISFVLTPSLTIKRVTPLDVIKEAADPTAQNDDERFESDVALMTGELGRMLTDLVDIL 293 Query: 241 GGQLRENDGTAALA 254 GG ++ AA A Sbjct: 294 GGDQHDSMHQAAAA 307 >rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco Escherichia coli K12 Length = 303 Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 150/244 (61%), Gaps = 3/244 (1%) Query: 2 HVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELLP 61 HV N Q ++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLP Sbjct: 58 HVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLP 117 Query: 62 RAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLS-SM 120 RAFS T WID VNG ++VD S KAE+ L LL K++ P+ L ++ +P+ ++ Sbjct: 118 RAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL-SMENPIELTL 176 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 T+W+ S A GF + + EL++ + +R + L E++ HIE+GK T+LAL W Sbjct: 177 TEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDW 236 Query: 181 NDRVSFVLTENLSVKKIAPLDVLK-EDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEA 239 R+ FV+ ++ S+K++ D L+ ++ D+ ++ +RFD DF+LMTGE++ ++ +LIE Sbjct: 237 QQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEG 296 Query: 240 LGGQ 243 LGG+ Sbjct: 297 LGGE 300 >ZyaiD [L] COG2974 DNA recombination-dependent growth factor C EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 145/243 (59%), Gaps = 1/243 (0%) Query: 2 HVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELLP 61 HV N Q ++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLP Sbjct: 58 HVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLP 117 Query: 62 RAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSMT 121 RAFS T WID VNG ++VD S KAE+ L LL K++ P+ L ++T Sbjct: 118 RAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLT 177 Query: 122 DWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTWN 181 +W+ S A GF + + EL++ + +R + L E++ HIE+GK T+LAL W Sbjct: 178 EWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQ 237 Query: 182 DRVSFVLTENLSVKKIAPLDVLK-EDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 R+ FV+ ++ S+K++ D L+ ++ D+ ++ +RFD DF+LMTGE++ ++ +LIE L Sbjct: 238 QRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 Query: 241 GGQ 243 GG+ Sbjct: 298 GGE 300 >ECs0445 [L] COG2974 DNA recombination-dependent growth factor C Ecs Escherichia coli O157:H7 Length = 303 Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 145/243 (59%), Gaps = 1/243 (0%) Query: 2 HVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELLP 61 HV N Q ++ E+K+LPS VI Q +A+ A+LE +Q + + LK++V LLP Sbjct: 58 HVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLP 117 Query: 62 RAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLSSMT 121 RAFS T WID VNG ++VD S KAE+ L LL K++ P+ L ++T Sbjct: 118 RAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLT 177 Query: 122 DWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTWN 181 +W+ S A GF + + EL++ + +R + L E++ HIE+GK T+LAL W Sbjct: 178 EWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQ 237 Query: 182 DRVSFVLTENLSVKKIAPLDVLK-EDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEAL 240 R+ FV+ ++ S+K++ D L+ ++ D+ ++ +RFD DF+LMTGE++ ++ +LIE L Sbjct: 238 QRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGL 297 Query: 241 GGQ 243 GG+ Sbjct: 298 GGE 300 >STM0392 [L] COG2974 DNA recombination-dependent growth factor C Sty Salmonella typhimurium LT2 Length = 303 Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 145/244 (59%), Gaps = 3/244 (1%) Query: 2 HVVNRQFLLKLDTEKKLLPSTVINQVTKARAAELEEQQGFAPGRKQTKELKEQVTDELLP 61 H N Q ++ E+K+LPS VI Q +A+ +LE QG + + LK++V LLP Sbjct: 58 HTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLP 117 Query: 62 RAFSIVRSTWTWIDPVNGWLIVDAGSPGKAEEVLKLLLKAIPKFPLETLRTVRSPLS-SM 120 RAFS T WID VNG ++VD S KAE+ L LL K++ P+ L + +P+ ++ Sbjct: 118 RAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPL-ALENPIELTL 176 Query: 121 TDWLASDEAPSGFTVDQDTELRASGDSKATVRFVRHTLEPEDVQRHIESGKQCTRLALTW 180 T+W+ S GF + + EL+A + +R + L +++ HIE+GK T+LAL W Sbjct: 177 TEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDW 236 Query: 181 NDRVSFVLTENLSVKKIAPLDVLK-EDSDVTAKNDDERFDGDFMLMTGEVSKMLADLIEA 239 R+ FV+ ++ S+K++ D L+ ++ D+ ++ +RFD DF+LMTGE++ ++ L+E Sbjct: 237 QQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEG 296 Query: 240 LGGQ 243 LGG+ Sbjct: 297 LGGE 300