BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0715.p         (120 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2934 [K] COG1733 Predicted transcriptional regulators Cac Clo...   122   2e-28
BS_yybR [K] COG1733 Predicted transcriptional regulators Bsu Bac...   121   3e-28
BS_ydeP [K] COG1733 Predicted transcriptional regulators Bsu Bac...   118   3e-27
mll7749 [K] COG1733 Predicted transcriptional regulators Mlo Mes...   117   6e-27
BH0737 [K] COG1733 Predicted transcriptional regulators Bha Baci...   115   2e-26

>CAC2934 [K] COG1733 Predicted transcriptional regulators Cac Clostridium
           acetobutylicum
          Length = 112

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 71/91 (78%)

Query: 8   RCPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRR 67
           +C +++ LD++GGKWK L+L+ L  GTLRFG+L +++P++TQ+MLT QLR LE  GL+ R
Sbjct: 10  QCSMELTLDIIGGKWKVLILWHLGKGTLRFGELMKTLPKITQKMLTQQLRSLEETGLINR 69

Query: 68  VVYAEVPPRVEYSLTPPGRSLTPVLEQLGGW 98
            VYA VPP+VEYSLT  G+SL P+LE L  W
Sbjct: 70  FVYASVPPKVEYSLTDTGKSLLPILENLRQW 100


>BS_yybR [K] COG1733 Predicted transcriptional regulators Bsu Bacillus
           subtilis
          Length = 125

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 2/114 (1%)

Query: 2   KAASPDR--CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLREL 59
           K   P++  CPV+  LD++GGKWK ++ Y +  G  RF + +R  P +TQRMLTLQLREL
Sbjct: 5   KNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLREL 64

Query: 60  ERDGLVRRVVYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNVSALQDYAHAG 113
           E DG+V R VY +VPP+VEYSLT  GR+L P++ Q+  W   N   L+ Y   G
Sbjct: 65  EADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNG 118


>BS_ydeP [K] COG1733 Predicted transcriptional regulators Bsu Bacillus
           subtilis
          Length = 128

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 73/109 (66%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRRV 68
           CPV+  LD++GGKWK ++LY L  G  RF + ++  P++TQRMLTLQLRELERDG++ R 
Sbjct: 18  CPVETTLDIIGGKWKGILLYHLIDGKKRFNEFRKLYPKITQRMLTLQLRELERDGVIHRE 77

Query: 69  VYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNVSALQDYAHAGTAES 117
           VY +VPP+VEYSLT  GR+L PV+  +  W  +    +     A  AE 
Sbjct: 78  VYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDRIDKLEAARKAED 126


>mll7749 [K] COG1733 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 120

 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 68/96 (70%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRRV 68
           C V+  L  + GKWK +VLY L  GTLRF +++R IP  TQRMLT QLRELE DGL+ R 
Sbjct: 15  CTVEGTLRYIDGKWKGVVLYHLFEGTLRFNEIRRRIPNCTQRMLTNQLRELEADGLIDRK 74

Query: 69  VYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNVS 104
           +Y EVPP+VEYSLTP GRSL PV+  L  W   NV+
Sbjct: 75  IYPEVPPKVEYSLTPRGRSLAPVITALKEWGDANVT 110


>BH0737 [K] COG1733 Predicted transcriptional regulators Bha Bacillus
           halodurans
          Length = 118

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 75/105 (71%)

Query: 9   CPVDMALDLVGGKWKSLVLYRLSAGTLRFGQLQRSIPEVTQRMLTLQLRELERDGLVRRV 68
           CPV+  LD++GGKWK ++LY L     RF +L+R +P +TQR+L+LQLRELE+DG+V R 
Sbjct: 14  CPVEATLDVIGGKWKGVILYYLLEEKRRFNELRRLMPGITQRILSLQLRELEKDGIVHRE 73

Query: 69  VYAEVPPRVEYSLTPPGRSLTPVLEQLGGWFHQNVSALQDYAHAG 113
           V+ EVPPRVEYS+T  GR+L P++ Q+  W  +  + +Q+    G
Sbjct: 74  VFPEVPPRVEYSITEFGRTLEPIINQMRDWGEEYKTRIQEKEDIG 118