BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0708.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5185 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...   166   2e-41
MT0172 [R] COG0824 Predicted thioesterase MtC Mycobacterium tube...   137   1e-32
Rv0163 [R] COG0824 Predicted thioesterase Mtu Mycobacterium tube...   136   2e-32
PA5329 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...    79   2e-15
VC1938 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae          62   5e-10

>PA5185 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 147

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 98/134 (73%)

Query: 10  RADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHFLMASRALDIPGGDVIGLVIET 69
           R  Y HF  + TRW DND+YGHVNNV YY++FDTAVN +L+    LDI GG+VIGLV+ +
Sbjct: 9   REQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSS 68

Query: 70  HCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTAAAQGHFIHVYVDAATRRP 129
            C+YFAPV+FP  +++G+RVA +GNSSV+YE+ +F EG   A A G F+HV+V+  + RP
Sbjct: 69  SCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRP 128

Query: 130 VTVPERMRSVLRTI 143
           V +P+ +R  L  +
Sbjct: 129 VAIPQELRDALAAL 142


>MT0172 [R] COG0824 Predicted thioesterase MtC Mycobacterium tuberculosis
           CDC1551
          Length = 151

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 2/140 (1%)

Query: 5   PTASRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHFLMASRALDIPGGDVIG 64
           P    R+D+P    + TRW DND++GH+NN VYY  FDTA+N ++  S  +D     V+G
Sbjct: 7   PEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLG 66

Query: 65  LVIETHCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTA--AAQGHFIHVYV 122
           +V E+ C YF+ + FP+++ +GV V  +G SSV Y +G+F+E  D     A GH++HVYV
Sbjct: 67  IVAESGCRYFSELRFPESLMVGVAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYV 126

Query: 123 DAATRRPVTVPERMRSVLRT 142
           D  +RRPV +PE +RS+L T
Sbjct: 127 DRTSRRPVPIPEAIRSLLST 146


>Rv0163 [R] COG0824 Predicted thioesterase Mtu Mycobacterium tuberculosis
           H37Rv
          Length = 151

 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 92/140 (65%), Gaps = 2/140 (1%)

Query: 5   PTASRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHFLMASRALDIPGGDVIG 64
           P    R+D+P    + TRW DND++GH+NN VYY  FDTA+N ++  S  +D     V+G
Sbjct: 7   PEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLG 66

Query: 65  LVIETHCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTA--AAQGHFIHVYV 122
           +V E+ C YF+ + FP+++ +G+ V  +G SSV Y +G+F+E  D     A GH++HVYV
Sbjct: 67  IVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYV 126

Query: 123 DAATRRPVTVPERMRSVLRT 142
           D  +RRPV +PE +RS+L T
Sbjct: 127 DRTSRRPVPIPEAIRSLLST 146


>PA5329 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 154

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)

Query: 6   TASRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHF---LMASRALDI--PGG 60
           +A++R +Y  FH+L+ RW + D  G V N  Y ++ D A   +   L  S   D+   GG
Sbjct: 3   SAAQRQNYTFFHSLRVRWAEVDPQGIVFNGNYLTYLDVATTEYYRQLGMSYPADLLRGGG 62

Query: 61  DVIGLVIETHCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTAAAQGHFIHV 120
           D+    +++   Y AP  F D + IG RVA +G SS+ +E+GI+R+  +     G  ++V
Sbjct: 63  DL--FAVKSTLEYRAPAHFDDWLDIGTRVARLGRSSLVFELGIWRD--EQLLTVGELVYV 118

Query: 121 YVDAATRRPVTVPERMRSVLRTILR 145
           Y DA  R+   +P+ +R  +R   R
Sbjct: 119 YADANERQSQPLPDWLREKIRAFER 143


>VC1938 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae
          Length = 149

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 8   SRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTA-VNHFLMASRALDIPGGDVIGLV 66
           S   D+P    +   W + D   HVNNVVY+ +F+TA +++F       ++    +  ++
Sbjct: 3   SLLKDFPVITKIVVAWGEMDALQHVNNVVYFRYFETARIDYFAHLKLMEELQRTQIGPVL 62

Query: 67  IETHCNYFAPVSFPDTVQIGVRVASVGNS--SVRYEVGIFREGGDTAAAQGHFIHVYVDA 124
            ET   Y  PV+FPDT+ IG R+ SV     S+ Y+V   + G  T       +      
Sbjct: 63  SETQARYKIPVTFPDTLLIGSRITSVQADRFSMEYQVVSQKLGKVTTVGSATVVMFNFKT 122

Query: 125 ATR--RPVTVPERMRSV 139
             +   P TVPE + ++
Sbjct: 123 GEKALLPPTVPEAIHTL 139