BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0693.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0053 [S] COG3159 Uncharacterized protein conserved in bacteri...   192   4e-49
PA5279 [S] COG3159 Uncharacterized protein conserved in bacteria...    87   4e-17
XF1482 [S] COG3159 Uncharacterized protein conserved in bacteria...    77   4e-14

>RSc0053 [S] COG3159 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 237

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 143/233 (61%), Gaps = 17/233 (7%)

Query: 17  MTTHLDSDSIADYLLDHPHFFEEHAELLGRIRLTSPLLGRAISLQERQMEILREKIKVQE 76
           M+T +++  +A+YL  HP FFEEHAELL  I+LTSP   RA+SLQERQMEILR+K K  E
Sbjct: 1   MST-MNAQDVANYLQTHPAFFEEHAELLAAIQLTSPHSHRAVSLQERQMEILRDKNKHLE 59

Query: 77  LHMADLMRIAQENDEITGKFQAWTRALLLARNDADLPQALAGKLQEIFNVPQVTLRLWNV 136
           L ++DL+R   END    +  AWT  LL   +   LP  +   L+EIF VP V LR+W V
Sbjct: 60  LKLSDLVRHGNENDRTQQRIHAWTARLLGEADAHALPYTVQDGLREIFEVPAVALRVWQV 119

Query: 137 AESHNDNWYTAAVSEDARIFANGLTTPFCGANNDFEAAGWLE-------DAASVKSLAML 189
           +E          VSE+ R+FA GL  P+CG N  FEAAGWLE       +  +V+S+A++
Sbjct: 120 SEEFAHLEVALGVSEEVRLFAAGLRAPYCGPNAGFEAAGWLELAEGGKGEGDAVQSVAIV 179

Query: 190 PLRV---------GAAPEAFGLLVLGSPDPSRFSADMATDFLSRISETASAAL 233
            LRV           A  AFGLLVLGSPD  RF   M T +L++I E A+AAL
Sbjct: 180 TLRVPVRDDADADAGAAPAFGLLVLGSPDARRFHDGMGTTYLAQIGELAAAAL 232


>PA5279 [S] COG3159 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 233

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 11  TLKKTHMTTHLDSDSIADYLLDHPHFFEEHAELLGRIRLT-SPLLGRAISLQERQMEILR 69
           T K    T  LD++ +A YL  HP FF EH EL+  +R+   P  G A+SL ERQ+ +LR
Sbjct: 2   TEKSQEPTAALDAEQVAAYLSQHPEFFVEHDELIPELRIPHQP--GDAVSLVERQVRLLR 59

Query: 70  EKIKVQELHMADLMRIAQENDEITGKFQAWTRALLLARNDADLPQALAGKLQEIFNVPQV 129
           E+       ++ LM +A+END +  K +     LL A +  D+   +   L+  F VP V
Sbjct: 60  ERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYV 119

Query: 130 TLRLWNVAESHNDNWYTAAVSEDA--RIFANGLTTPFCGANNDFEAAGWL--EDAASVKS 185
           +L L++ +        ++A +  A   + + G T   CG     E A      D   + S
Sbjct: 120 SLILFSDSSVSVGRSVSSAEAHQAIGGLLSGGKTV--CGVLRPHELAFLFGESDRDEIGS 177

Query: 186 LAMLPLRVGAAPEAFGLLVLGSPDPSRFSADMATDFLSRISETASAAL 233
            A++ L         G+L +GSPDP  + + + T FL  ++E  +  L
Sbjct: 178 AAVVSLSFQG---LHGVLAIGSPDPQHYKSSLGTLFLGYVAEVLARVL 222


>XF1482 [S] COG3159 Uncharacterized protein conserved in bacteria Xfa
           Xylella fastidiosa 9a5c
          Length = 226

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 14/214 (6%)

Query: 26  IADYLLDHPHFFEEHAELLGRIRLTSPLLGRAI-SLQERQMEILREKIKVQELHMADLMR 84
           +A +L  HP F ++  +L   + L  P    +  SL   Q+E+LREK +     +A L  
Sbjct: 16  VAAWLRRHPTFLKQFPDL--ALTLVVPRENASTASLASYQLEVLREKNRELSRRLAALTG 73

Query: 85  IAQENDEITGKFQAWTRALLLARNDADLPQALAGKLQEIFNVPQVTLRLWNVAESHNDNW 144
            AQ N+++  +    T  L+  R+ AD  +AL   L E FN   V L L +        W
Sbjct: 74  NAQANEQLAMRIHQLTLTLMRQRSAADTLRALVASLAEDFNGDCVRLVLLHPVAGLQAAW 133

Query: 145 YTAAVSEDARI--FANGLT--TPFCGA-NNDFEAAGWLEDAASVKSLAMLPLRVGAAPEA 199
                S+D R+  F + L    P CG  N + +   + E+A+ V+S A+LPL        
Sbjct: 134 LQVIESDDVRLVPFRDCLRDGEPICGRLNINKQVLLYAEEASQVQSSALLPL------SG 187

Query: 200 FGLLVLGSPDPSRFSADMATDFLSRISETASAAL 233
            GL+ +GS DP+RF   M T FL  + +    AL
Sbjct: 188 LGLIAIGSYDPNRFYPGMGTLFLRMMGQALFDAL 221