BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0672.p         (347 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ...   458   e-129
mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, ...   343   5e-94
CC3176_1 Non COG                                                      315   1e-85

>RSc3122_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and
           beta subunits Rso Ralstonia solanacearum
          Length = 762

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 209/315 (66%), Positives = 260/315 (82%)

Query: 1   MNAPLPSSERLLLDDISLDDKYSLERGRVFMTGIQALIRLPMLQRQHDLQAGLNTAGYVT 60
           MNAPL  + R  L+ +SLDDKY+LERGR++++G QAL+RLPMLQ++ D  AGLNTAG+++
Sbjct: 1   MNAPLNDALRRALETVSLDDKYTLERGRIYISGTQALVRLPMLQQERDRIAGLNTAGFIS 60

Query: 61  GYRGSPLGTVDQTAAKARKYLDAAHVKFHPGMNEDLAATAVWGTQQVNLFPGAQYDGVFS 120
           GYRGSPLG +DQ   KA+K+L   ++ F  G+NEDLAAT+VWG+QQVNL+P A++DGVF 
Sbjct: 61  GYRGSPLGALDQALWKAQKHLSGHNIVFQAGLNEDLAATSVWGSQQVNLYPSARFDGVFG 120

Query: 121 LWYGKGPGVDRCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTTAHQSEHILKACGIPV 180
           +WYGKGPGVDR  DVFKHAN AG+S HGGVLV+AGDDHA KSST AHQSEH+ KA GIPV
Sbjct: 121 MWYGKGPGVDRTIDVFKHANSAGSSAHGGVLVLAGDDHACKSSTLAHQSEHVFKAAGIPV 180

Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVSLKCVTDIVESGMSVEIDPQRVQPIIPTDFELP 240
           LYPS+VQEYLDYGLHGWAMSRY+GLWV++KCVTD+VES  SV++DP R + ++P DF +P
Sbjct: 181 LYPSNVQEYLDYGLHGWAMSRYSGLWVAMKCVTDVVESSASVDVDPHRAEIVLPEDFVMP 240

Query: 241 LDGLNIRQPDTVLEQETRMNVYKWYAALAYARVNKLNQIIWDSPRARIGIVTAGKSYLDT 300
             GLNIR PD  L QE R+  YKWYA LAY R NKL++++ DSP+AR GI+TAGK+YLD 
Sbjct: 241 AGGLNIRWPDPPLVQEARLLDYKWYAGLAYVRANKLDRVVLDSPQARFGIMTAGKAYLDV 300

Query: 301 RQALYDLGIDEQVAR 315
           RQAL DLG+D++  R
Sbjct: 301 RQALVDLGLDDETCR 315


>mlr5175_1 [C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and
           beta subunits Mlo Mesorhizobium loti
          Length = 724

 Score =  343 bits (879), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 162/305 (53%), Positives = 223/305 (73%), Gaps = 2/305 (0%)

Query: 11  LLLDDISLDDKYSLERGRVFMTGIQALIRLPMLQRQHDLQAGLNTAGYVTGYRGSPLGTV 70
           + L D++LDDK+ L + R+F++G QA+IR+ ++QR+ D +AGLNTAG+V+GYRGSPLG +
Sbjct: 1   MTLHDVALDDKFDLGKERIFLSGAQAVIRMLLMQRERDRRAGLNTAGFVSGYRGSPLGGL 60

Query: 71  DQTAAKARKYLDAAHVKFHPGMNEDLAATAVWGTQQVNLFPGAQYDGVFSLWYGKGPGVD 130
           D    KA+K L  A + F PG+NE+LAATA WG+QQ  L     +DGVFS+WYGKGPGVD
Sbjct: 61  DMQLWKAKKQLAGADIVFQPGLNEELAATACWGSQQTELLGEGTHDGVFSVWYGKGPGVD 120

Query: 131 RCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTTAHQSEHILKACGIPVLYPSSVQEYL 190
           R GDVF+HAN+AG+S+HGGVL + GDDH A+SST AH +E +     +P+L P+ VQE +
Sbjct: 121 RSGDVFRHANLAGSSKHGGVLALMGDDHMAESSTNAHATEFLFVDTMVPILNPAGVQEII 180

Query: 191 DYGLHGWAMSRYTGLWVSLKCVTDIVESGMSVEIDPQRVQPIIPTDFELPLDGLNIRQPD 250
           DYGL+G+AMSR+ G W ++KCV D +ES  SV+   +R+  ++P +F++P  GLNIR   
Sbjct: 181 DYGLYGFAMSRFAGTWAAIKCVKDNIESTASVDASLERLNIVVP-EFDMPPGGLNIRHEI 239

Query: 251 TVLEQETRMNVYKWYAALAYARVNKLNQIIWDSPR-ARIGIVTAGKSYLDTRQALYDLGI 309
            +L QE R++ YK  AA A+   N LN+I++   R  ++GI+T GKSYLD RQAL D+GI
Sbjct: 240 DMLGQEERLHEYKRAAASAFIHANGLNRIVYSGGRNPKLGIITLGKSYLDVRQALEDIGI 299

Query: 310 DEQVA 314
           DE  A
Sbjct: 300 DEAAA 304


>CC3176_1 Non COG
          Length = 715

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/296 (52%), Positives = 208/296 (70%), Gaps = 6/296 (2%)

Query: 24  LERGRVFMTGIQALIRLPMLQRQHDLQAGLNTAGYVTGYRGSPLGTVDQTAAKARKYLDA 83
           LE GR F+TG+QAL+R+ + +++ D +AGLNT GY++GYRGSPLG +DQ AA+ +K L A
Sbjct: 2   LEDGRAFITGVQALLRVLLDRKRLDRKAGLNTGGYLSGYRGSPLGGLDQQAARIKKLLTA 61

Query: 84  AHVKFHPGMNEDLAATAVWGTQQVNLFPGAQYDGVFSLWYGKGPGVDRCGDVFKHANMAG 143
             V F  G+NEDLAATAVWG+QQ NLFPGA YDGVF +WYGK PGVDR GDVFKHAN AG
Sbjct: 62  HDVVFQEGLNEDLAATAVWGSQQANLFPGALYDGVFGMWYGKAPGVDRTGDVFKHANFAG 121

Query: 144 TSQHGGVLVIAGDDHAAKSSTTAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYT 203
           T   GGVL +AGDDH  KSST   QSE   +   +PVL P+ VQE LDYGL G +MSR++
Sbjct: 122 TFPTGGVLAVAGDDHGCKSSTLPSQSEFAFQDFEMPVLSPADVQEVLDYGLLGISMSRFS 181

Query: 204 GLWVSLKCVTDIVESGMSVEIDPQRVQPIIPTDFELPLDGLNIRQPDTVLEQETRMNVYK 263
           GLW  +  + D ++SG+++++   R Q ++P +F  P  GL IRQ D  +E+E RM ++K
Sbjct: 182 GLWTGMIALADTMDSGVTIDVSLDRHQIVVP-EFAFPPGGLGIRQKDQPMEKERRMRLHK 240

Query: 264 WYAALAYARVNKLNQIIWDSP-----RARIGIVTAGKSYLDTRQALYDLGIDEQVA 314
             AALA+AR N +++++  +      +AR+GIV  G++Y D  +A   +G+  Q A
Sbjct: 241 IPAALAFARANNIDRVVLGASHVKVGKARLGIVCQGQAYKDVLEAFTAMGMTLQEA 296