BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0667.p (359 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2901 [J] COG0216 Protein chain release factor A Rso Ralstonia... 583 e-166 NMB1686 [J] COG0216 Protein chain release factor A Nme Neisseria... 572 e-163 NMA1945 [J] COG0216 Protein chain release factor A NmA Neisseria... 568 e-162 PM0555 [J] COG0216 Protein chain release factor A Pmu Pasteurell... 473 e-133 HI1561 [J] COG0216 Protein chain release factor A Hin Haemophilu... 471 e-132 >RSc2901 [J] COG0216 Protein chain release factor A Rso Ralstonia solanacearum Length = 360 Score = 583 bits (1502), Expect = e-166, Method: Compositional matrix adjust. Identities = 275/359 (76%), Positives = 319/359 (88%) Query: 1 MKPSMLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAAN 60 MKPSML+KLDQLAER E+N LL +++AT+++D YRK+TREHAEL P+VA Y + QA + Sbjct: 1 MKPSMLSKLDQLAERTVEINALLAREDATANLDQYRKLTREHAELEPVVAQYAAWKQAED 60 Query: 61 DITTAQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTG 120 D+TTAQELL+DPDMK FA++EI A+ RM TLEA+LQ++LLPKDPND RNIFLEIRAGTG Sbjct: 61 DVTTAQELLADPDMKAFAEDEIRAARERMTTLEAELQRLLLPKDPNDHRNIFLEIRAGTG 120 Query: 121 GDESALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESG 180 GDESALFAGDLLRMYTR+AER RWQVE++S S S++GGYKEVIVR+ G GAYSRLKFESG Sbjct: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIVRLVGEGAYSRLKFESG 180 Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240 GHRVQRVPATE QGRIHTSACTVAVMPEAD + D+ INPAD+RIDT+RASGAGGQHINKT Sbjct: 181 GHRVQRVPATEAQGRIHTSACTVAVMPEADPLADIQINPADLRIDTFRASGAGGQHINKT 240 Query: 241 DSAVRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300 DSAVR+TH+PTG+VVECQDDRSQH+NK A++VLAAR+KD Q RE Q+KEA+ RKSLIGS Sbjct: 241 DSAVRLTHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLIGS 300 Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 359 GDRS+RIRTYNFPQGR+TDHRINLTLYK+D +MDGDL EL AL EHQAE LA LG+E Sbjct: 301 GDRSDRIRTYNFPQGRITDHRINLTLYKIDALMDGDLGELLGALAAEHQAEQLAALGEE 359 >NMB1686 [J] COG0216 Protein chain release factor A Nme Neisseria meningitidis MC58 Length = 358 Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust. Identities = 274/358 (76%), Positives = 324/358 (90%) Query: 1 MKPSMLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAAN 60 MKPS+L KL QL++RLEE+ +LL Q EATSDMDNYRK+TREHAEL P+V ++ Y A + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 61 DITTAQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTG 120 D+ A+E+LSDP+MK+FA EEI AKA++ L+ +LQK+LLPKD +D++NIF+EIRAGTG Sbjct: 61 DLADAEEMLSDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTG 120 Query: 121 GDESALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESG 180 GDE+ALFAGDLLRMY+R+AERNRWQVE++SA++SE+GGYKEVI RI G GAYSRLKFESG Sbjct: 121 GDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESG 180 Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240 GHRVQRVPATE+QGRIHTSACTVAVMPEADE+ED+++NPAD+RIDT+RASGAGGQHINKT Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKT 240 Query: 241 DSAVRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300 DSAVRITH+PTG+VVECQD RSQH NKA A+KVLAAR+ D Q RE Q+KEAA RKSLIGS Sbjct: 241 DSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGS 300 Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 358 GDRSERIRTYN+PQGR+TDHRINLTL+KLDF+MDGDLEE+TNALI EHQAELLA +GD Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAMGD 358 >NMA1945 [J] COG0216 Protein chain release factor A NmA Neisseria meningitidis Z2491 Length = 358 Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/358 (76%), Positives = 322/358 (89%) Query: 1 MKPSMLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAAN 60 MKPS+L KL QL +RLEE+ +LL Q EATSDMDNYRK+TREHAEL P+V ++ Y A + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 61 DITTAQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTG 120 D+ A+E+LSDP+MK+FA EEI AKA++ L+ +LQK+LLPKD +D++NIF+EIRAGTG Sbjct: 61 DLADAEEMLSDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTG 120 Query: 121 GDESALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESG 180 GDE+ALFAGDLLRMY+R+AERNRWQVE++SA++SE+GGYKEVI RI G GAYSRLKFESG Sbjct: 121 GDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESG 180 Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240 GHRVQRVPATE+QGRIHTSACTVAVMPEADE+ED+++NPAD+RIDT+RASGAGGQHINKT Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKT 240 Query: 241 DSAVRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300 DSAVRITH+PTG+VVECQD RSQH NKA A+KVLAAR+ D Q RE Q+KEAA RKSLIGS Sbjct: 241 DSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGS 300 Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 358 GDRSERIRTYN+PQGR+TDHRINLTL+KLDF+MDGDL E+TNALI EHQAELLA +GD Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITNALIAEHQAELLAAMGD 358 >PM0555 [J] COG0216 Protein chain release factor A Pmu Pasteurella multocida Length = 360 Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust. Identities = 219/359 (61%), Positives = 284/359 (79%) Query: 1 MKPSMLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAAN 60 MKP++++KL+ L ER EEL LL + SD D +R ++E+A+L +V + + Q + Sbjct: 1 MKPTIISKLESLKERHEELEALLGEASVISDQDKFRAYSKEYAQLEDVVKCFARWNQLNS 60 Query: 61 DITTAQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTG 120 ++ AQ LL DP MKE AQEEI K +E +E LQ +LLPKDPNDE N +LEIRAGTG Sbjct: 61 NMEEAQLLLDDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTG 120 Query: 121 GDESALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESG 180 GDE+ +FAGDL RMY+R+AE RW+VE++SA++SE GGYKE+IV++ G G Y +LKFESG Sbjct: 121 GDEAGIFAGDLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESG 180 Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240 GHRVQRVP TE+QGRIHTSACTVAVMPE E E +INP+D+RIDTYR+SGAGGQH+N T Sbjct: 181 GHRVQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTT 240 Query: 241 DSAVRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300 DSAVRITH+PTGIVVECQD+RSQHKNKA A+ VLA+RI + Q+ +A TR++L+GS Sbjct: 241 DSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRNLLGS 300 Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 359 GDRS++IRTYN+PQGR+TDHRINLT+Y+LD +M+G ++EL +ITE+QA+ LA L ++ Sbjct: 301 GDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAALSEQ 359 >HI1561 [J] COG0216 Protein chain release factor A Hin Haemophilus influenzae Length = 361 Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/359 (61%), Positives = 283/359 (78%) Query: 1 MKPSMLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAAN 60 MK S++AKL+ L ER EEL LL SD D +R ++E+++L +V ++ + Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 61 DITTAQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTG 120 +I A+ LL DP+MKE AQ EI +KA +E +E LQ +LLPKDPNDE N +LEIRAGTG Sbjct: 62 NIEEAEILLDDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIRAGTG 121 Query: 121 GDESALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESG 180 GDE+ +FAGDL RMY+R+AE RW+VEM+SA++SE GGYKEVIV++ G G Y +LKFESG Sbjct: 122 GDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVTGEGVYGQLKFESG 181 Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240 GHRVQRVP TE+QGRIHTSACTVAVMPE E E +INPAD+RIDTYR+SGAGGQH+N T Sbjct: 182 GHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTT 241 Query: 241 DSAVRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300 DSAVRITH+PTGIVVECQD+RSQHKNKA A+ VLA+RI + Q +++ R++L+GS Sbjct: 242 DSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRNLLGS 301 Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 359 GDRS++IRTYN+PQGR+TDHRINLT+Y+LD +M+G ++EL +ITE+QA+ LA L ++ Sbjct: 302 GDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAALSEQ 360