BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0661.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2458 [J] COG0060 Isoleucyl-tRNA synthetase Rso Ralstonia sola...   201   1e-51
PA4560 [J] COG0060 Isoleucyl-tRNA synthetase Pae Pseudomonas aer...   176   4e-44
NMB1833 [J] COG0060 Isoleucyl-tRNA synthetase Nme Neisseria meni...   151   2e-36
NMA0622 [J] COG0060 Isoleucyl-tRNA synthetase NmA Neisseria meni...   150   2e-36
BH2545 [J] COG0060 Isoleucyl-tRNA synthetase Bha Bacillus halodu...   124   2e-28

>RSc2458 [J] COG0060 Isoleucyl-tRNA synthetase Rso Ralstonia solanacearum
          Length = 960

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 107/135 (79%)

Query: 1   VTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGRYASSLPLFAGLTIWEAS 60
           VT D+GTGIVHSAPAYG+EDF SCKAHGM D +II+PVMG+G YAS+LPLF GL+IW+A+
Sbjct: 337 VTTDTGTGIVHSAPAYGVEDFQSCKAHGMPDSEIINPVMGNGVYASTLPLFGGLSIWDAN 396

Query: 61  KPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDNTPKDGGKSLRETA 120
             I   L+  G+LF    + HSYMHCWRHKTPIIYRATSQWFA MD  P DG  +LRE A
Sbjct: 397 PKIVEVLKASGNLFDAHKYAHSYMHCWRHKTPIIYRATSQWFAGMDVQPNDGNATLREAA 456

Query: 121 LQGIEDTAFFPAWGN 135
           L GI+ TAF+P+WG 
Sbjct: 457 LAGIDATAFYPSWGK 471


>PA4560 [J] COG0060 Isoleucyl-tRNA synthetase Pae Pseudomonas aeruginosa
          Length = 943

 Score =  176 bits (447), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 1   VTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGRYASSLPLFAGLTIWEAS 60
           V  D+GTGIVHS+PAYG +DF +CK +GM +DDI+SPV  +G Y  SLP F G  IW+A+
Sbjct: 319 VALDAGTGIVHSSPAYGEDDFYTCKRYGMSNDDILSPVQSNGVYVDSLPFFGGQFIWKAN 378

Query: 61  KPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDNTPKDGGKSLRETA 120
             + AKLEEVGSL      +HSYMHCWRHKTP+IYRAT+QWF  MD  P+ G  SLRE A
Sbjct: 379 PNVVAKLEEVGSLLAHETINHSYMHCWRHKTPLIYRATAQWFVGMDKQPRQGA-SLRERA 437

Query: 121 LQGIEDTAFFPAWG 134
           L+ I  T F P WG
Sbjct: 438 LEAITQTEFVPGWG 451


>NMB1833 [J] COG0060 Isoleucyl-tRNA synthetase Nme Neisseria meningitidis
           MC58
          Length = 929

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 92/134 (68%), Gaps = 4/134 (2%)

Query: 1   VTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGRYASSLPLFAGLTIWEAS 60
           VT D+GTG+VH+APA+G+ED+  C  +G+   ++ +PV  +GRY    P  AG+ +WEA+
Sbjct: 321 VTTDAGTGLVHTAPAHGLEDYAVCNKYGI---ELYNPVNAEGRYIGETPRVAGMRVWEAN 377

Query: 61  KPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDNTPKDGGKSLRETA 120
             I   LEE G+L      +HSY HCWRHKTP+IYRAT QWF  MD    D GK+LR+ A
Sbjct: 378 PVILQWLEETGNLLASSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGAD-GKTLRDKA 436

Query: 121 LQGIEDTAFFPAWG 134
           ++ ++DT FFP+WG
Sbjct: 437 IKAVDDTEFFPSWG 450


>NMA0622 [J] COG0060 Isoleucyl-tRNA synthetase NmA Neisseria meningitidis
           Z2491
          Length = 929

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 92/134 (68%), Gaps = 4/134 (2%)

Query: 1   VTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGRYASSLPLFAGLTIWEAS 60
           VT D+GTG+VH+APA+G+ED+  C  +G+   ++ +PV  +G+Y    P  AG+ +WEA+
Sbjct: 321 VTTDAGTGLVHTAPAHGLEDYAVCNKYGI---ELYNPVNAEGKYIGETPRVAGMRVWEAN 377

Query: 61  KPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDNTPKDGGKSLRETA 120
             I   LEE G+L      +HSY HCWRHKTP+IYRAT QWF  MD    D GK+LR+ A
Sbjct: 378 SVILQWLEETGNLLASSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGAD-GKTLRDKA 436

Query: 121 LQGIEDTAFFPAWG 134
           ++ ++DT FFP+WG
Sbjct: 437 IKAVDDTEFFPSWG 450


>BH2545 [J] COG0060 Isoleucyl-tRNA synthetase Bha Bacillus halodurans
          Length = 921

 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 90/154 (58%), Gaps = 19/154 (12%)

Query: 1   VTADSGTGIVHSAPAYGIEDFISCKAHGMKDDDIISPVMGDGRYASSLPLFAGLTIWEAS 60
           VT D+GTG VH+AP +G ED+I  + +G+   D++ PV   G   +  P F GL   EA+
Sbjct: 313 VTLDAGTGCVHTAPGHGEEDYIVGQKYGL---DVLCPVDDKGYMTAEAPGFEGLFYDEAN 369

Query: 61  KPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDNTPKDGGKSLRETA 120
           KPI  KL+E G+L KL    HSY H WR K P+IYRAT+QWFAS++N         R+  
Sbjct: 370 KPITQKLDECGALLKLTFITHSYAHDWRTKKPVIYRATAQWFASIEN--------FRDEL 421

Query: 121 LQGIEDTAFFPAWGN--LSRRLRDR------RQR 146
           L+ I++  + P WG   L   +RDR      RQR
Sbjct: 422 LRAIQEVKWVPEWGETRLYNMVRDRGDWCISRQR 455