BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0645.p (306 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2175 [R] COG1079 Uncharacterized ABC-type transport system, p... 489 e-138 BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system,... 290 3e-78 SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, p... 283 2e-76 PA0138 [R] COG1079 Uncharacterized ABC-type transport system, pe... 276 3e-74 AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, p... 275 9e-74 >RSc2175 [R] COG1079 Uncharacterized ABC-type transport system, permease component Rso Ralstonia solanacearum Length = 306 Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust. Identities = 252/306 (82%), Positives = 279/306 (91%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+ LAPLIAASINAGTPLLLAA+GLL+NERAGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GM+MA LF+WLALVL TNQVATGLALSIFG GLSAF+GQRFVG++LP+Q+ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 G+PGL +LPFVGPA F QHWM Y ALLLC AIAWFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYCALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSL+YTPMWVE +V+GRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GV++PSQILSM P+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPG + Sbjct: 301 FRPGTA 306 >BMEII0701 [R] COG1079 Uncharacterized ABC-type transport system, permease component Bme Brucella melitensis Length = 304 Score = 290 bits (741), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 170/292 (58%), Positives = 208/292 (71%), Gaps = 1/292 (0%) Query: 13 NAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPLLGFLAGALCGML 72 A TPLL+AAIG L+ ER+GVLNLG EGMML+ A++GFAV T S LG +A L G L Sbjct: 11 TAATPLLIAAIGELVVERSGVLNLGVEGMMLMGAVSGFAVAQITGSAWLGLVAAVLVGAL 70 Query: 73 MATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGL-ALPSQSTGVPGLNNLPFV 131 A +F +L L L TNQVATGLAL+I G G+SA +G+ FVGL + +P L +LP + Sbjct: 71 FAAVFGFLTLTLVTNQVATGLALTILGVGVSALLGESFVGLPGVRLNPIYIPYLTDLPLI 130 Query: 132 GPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGYSVRGIRFLALL 191 G F Q + Y+++ L +AWFL+RTRAGL LRA+G+S SAHALG V R+LA+L Sbjct: 131 GRFLFGQDPIFYMSIALVIGVAWFLFRTRAGLTLRAIGDSHGSAHALGVHVVRTRYLAVL 190 Query: 192 FGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLLGSLLFGGVTIL 251 FGGAC GLAGA LSLVY P WVE + +GRGWIALAL FA+WRP RVL+G+ LFG VTI Sbjct: 191 FGGACAGLAGAQLSLVYVPQWVENMTAGRGWIALALVVFASWRPWRVLVGAYLFGAVTIG 250 Query: 252 QFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKPFRP 303 Q + Q +G +PSQ LS LPY+ATIVVL +ISRN +N PASLGKPF P Sbjct: 251 QLHAQALGFGLPSQFLSALPYLATIVVLVIISRNKRLTMMNTPASLGKPFVP 302 >SMa1514 [R] COG1079 Uncharacterized ABC-type transport system, permease component Sme Sinorhizobium meliloti Length = 306 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 157/304 (51%), Positives = 210/304 (69%), Gaps = 3/304 (0%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLV-AAIAGFAVGYTTRSP 59 MD + +I A TPL+ AA+G L+ E++GVLNLG EGMML+ AA A +AV P Sbjct: 1 MDLFIAIFTGTIIAATPLIFAALGELVVEKSGVLNLGLEGMMLMGAAFAFWAVIAGLPMP 60 Query: 60 LLGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPS-Q 118 + + LF LAL TNQ A GLAL+IFG+G+SAF+G+ F + + + Sbjct: 61 VAIAAGALAG-AATSLLFGVLALTFLTNQYAAGLALAIFGSGVSAFLGRGFGSAPIDALK 119 Query: 119 STGVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHAL 178 +P L+++P VGP FF M Y+A+ + I WFLYRT+ GLILR +GESPE++HA+ Sbjct: 120 RVHIPFLSDIPVVGPMFFRFDPMVYLAIGMFGLITWFLYRTKGGLILRTIGESPETSHAI 179 Query: 179 GYSVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARV 238 GY V IR+LA+LFGG GLAGAYLS+ YTP+WVE + +G+GWI+LAL FATWRP RV Sbjct: 180 GYPVIRIRYLAVLFGGLMAGLAGAYLSVAYTPLWVENMTAGKGWISLALVVFATWRPLRV 239 Query: 239 LLGSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLG 298 L+G+ LFGG+TILQ Q +G+ +PS++LS LPY+ATI+VL +IS+N + L+ PASL Sbjct: 240 LIGAWLFGGMTILQLQGQALGIAVPSELLSALPYLATIIVLVIISQNRQLLTLHFPASLA 299 Query: 299 KPFR 302 KPFR Sbjct: 300 KPFR 303 >PA0138 [R] COG1079 Uncharacterized ABC-type transport system, permease component Pae Pseudomonas aeruginosa Length = 308 Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 165/305 (54%), Positives = 215/305 (70%), Gaps = 1/305 (0%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 +D L L+ A + GTPLLL A+G L+ ER+GVLNLG EGMML A+ GF V +++ S Sbjct: 3 IDLLDNLLFAMVRTGTPLLLVALGELVCERSGVLNLGQEGMMLFGAVIGFMVAFSSGSLW 62 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQS- 119 LG L L GML+A LF+ +AL L NQVA GLAL+IFG GL++F+G +VG L + Sbjct: 63 LGVLLAVLAGMLLAALFAGVALYLNANQVACGLALTIFGVGLASFVGAAWVGKPLQGFAP 122 Query: 120 TGVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALG 179 +P L LP +G F Q + Y++L L AA+AW L R+RAGL+L+AVGE+P++A A+G Sbjct: 123 LALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASAMG 182 Query: 180 YSVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVL 239 V +R LA+LFGGA GLAGAYLSL YTPMW E + +GRGWIALAL FA+WR RVL Sbjct: 183 LPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAENMTAGRGWIALALVVFASWRVLRVL 242 Query: 240 LGSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGK 299 LG+ LFG +IL QGVG++IP+ +L+MLPY ATI+VL L+SR+ RL P SLG+ Sbjct: 243 LGAWLFGLASILHLVAQGVGLSIPANLLAMLPYAATILVLVLLSRDALRTRLYAPVSLGQ 302 Query: 300 PFRPG 304 P++ G Sbjct: 303 PWKAG 307 >AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 307 Score = 275 bits (703), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 164/304 (53%), Positives = 212/304 (69%), Gaps = 1/304 (0%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 MD L ++ I A TPL++AA G L+ ER+GVLNLG EGMM++ A+ FA + T SP Sbjct: 2 MDMLQAILLTVITAATPLVIAASGELVAERSGVLNLGVEGMMIMGAVCAFAATHMTGSPY 61 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGL-ALPSQS 119 LG LAG G + + LF +L L L TNQVATGLAL+I G G+S +G+ FVGL + Q Sbjct: 62 LGILAGIASGAVFSLLFGFLTLTLVTNQVATGLALTILGLGVSGMLGESFVGLPGIKLQP 121 Query: 120 TGVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALG 179 P L+ +PF+GP F Q + Y+++ L I+WFL+++RAGL +RA+G++ SAHALG Sbjct: 122 IVFPVLSEIPFIGPLLFRQDLIFYMSIALVFGISWFLFKSRAGLKIRAIGDNHASAHALG 181 Query: 180 YSVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVL 239 +V R+LA++FGGAC GLAGA LSLVYTP WVE + +GRGWIALAL FA+WRP R+L Sbjct: 182 INVIRTRYLAVMFGGACAGLAGAQLSLVYTPQWVENMSAGRGWIALALVVFASWRPWRLL 241 Query: 240 LGSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGK 299 G LFG VTI Q + Q G+ +PSQ+LS LPY+ATIVVL +IS N +N PASLGK Sbjct: 242 AGGYLFGAVTIGQLHAQAFGIGVPSQLLSALPYLATIVVLVIISHNRRTTLINTPASLGK 301 Query: 300 PFRP 303 F P Sbjct: 302 SFVP 305