BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0622.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me...    60   4e-09
AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium...    60   5e-09
AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium ...    59   1e-08

>BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis
          Length = 270

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 49/81 (60%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           VVREALS+LK +GLVE R GSGVFV +++  K  RI    V   +++ Q++EL  AIE  
Sbjct: 79  VVREALSQLKLDGLVEARAGSGVFVIDESNQKAFRIQPLVVEEAQSLEQLMELLVAIEVA 138

Query: 61  VAAQAAKRRTDADMAAIDAAL 81
               AA  RT  D+  I  AL
Sbjct: 139 ATRIAAVNRTPEDLKQIKRAL 159


>AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 245

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 6/84 (7%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGI--KPLR-IDYTEVSSPEAVLQIVELRRAI 57
           VVREA++ L+ +GLVEPRQG+GVFV E A +  +P   +D   VSS   +++++ELR A+
Sbjct: 56  VVREAVASLRSDGLVEPRQGAGVFVLEPAPVERRPFHNVDLARVSS---LIEMLELRTAV 112

Query: 58  EAEVAAQAAKRRTDADMAAIDAAL 81
           E + A  AA RR+ A    I  A 
Sbjct: 113 EGDAAGLAAIRRSPAQEEKIIEAF 136


>AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 237

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 5/101 (4%)

Query: 1   VVREALSRLKHEGLVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAE 60
           VVREA++ L+  G V P QG GVFV+  +    +++  +EV +    L+++E R A E E
Sbjct: 51  VVREAIADLRSAGYVVPIQGKGVFVSNASEWTGVKLTQSEVGTIAETLEMLEFRLATEGE 110

Query: 61  VAAQAAKRRTDADMAAIDAALARXDADMA-AIDAAPVAVKA 100
            AA AA RRT    AAI AA  +    MA AIDA    V A
Sbjct: 111 AAAIAAYRRTAQQEAAISAAHRK----MARAIDAGETTVDA 147