BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0618.p         (67 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    125   3e-29
RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    122   2e-28
NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitid...   119   1e-27
NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitid...   119   2e-27
RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    105   2e-23

>RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 63/66 (95%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60
          MATGTVKWFND+KGFGFITPD+GGEDLFAHFSAI M GFKTLKEGQ+V FE+TQGPKGKQ
Sbjct: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPKGKQ 60

Query: 61 ASNIQA 66
          ASNIQA
Sbjct: 61 ASNIQA 66


>RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 64/66 (96%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60
          MA GTVKWFND+KGFGFI+PD+GGE+LFAHFSAIQMNGFKTLKEGQ+V F+VTQGPKGKQ
Sbjct: 1  MANGTVKWFNDAKGFGFISPDEGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPKGKQ 60

Query: 61 ASNIQA 66
          A+NIQA
Sbjct: 61 ATNIQA 66


>NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitidis Z2491
          Length = 67

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/66 (84%), Positives = 62/66 (93%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60
          MATG VKWFND+KGFGFITPD+GGEDLFAHFSAI M+GFKTLKEGQ+V F+VT GPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGPKGKQ 60

Query: 61 ASNIQA 66
          A+NIQA
Sbjct: 61 AANIQA 66


>NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitidis MC58
          Length = 67

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/66 (84%), Positives = 61/66 (92%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60
          MATG VKWFND+KGFGFITPD+GGEDLFAHFSAI M GFKTLKEGQ+V F+VT GPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKGKQ 60

Query: 61 ASNIQA 66
          A+NIQA
Sbjct: 61 AANIQA 66


>RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 57/65 (87%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60
          MATGTVKWFN++KGFGFITPD GG DLFAHFS IQ +GFKTLK+GQKV FEV QGPKG Q
Sbjct: 1  MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPKGLQ 60

Query: 61 ASNIQ 65
          AS I+
Sbjct: 61 ASGIK 65