BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0613.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2556 [J] COG0268 Ribosomal protein S20 Rso Ralstonia solanace...   128   4e-30
NMB0463 [J] COG0268 Ribosomal protein S20 Nme Neisseria meningit...   119   1e-27
NMA2022 [J] COG0268 Ribosomal protein S20 NmA Neisseria meningit...   119   1e-27
PA4563 [J] COG0268 Ribosomal protein S20 Pae Pseudomonas aeruginosa    94   6e-20
STM0043 [J] COG0268 Ribosomal protein S20 Sty Salmonella typhimu...    79   2e-15

>RSc2556 [J] COG0268 Ribosomal protein S20 Rso Ralstonia solanacearum
          Length = 88

 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 77/88 (87%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MANTAQARKRARQAV QNAHNS+ RS LRTA+KAVRKAI  GDKAAA  VF+ + STIDS
Sbjct: 1  MANTAQARKRARQAVVQNAHNSALRSRLRTAVKAVRKAIAGGDKAAAANVFKQAQSTIDS 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALAA 88
          IADKKI+HKNKAAR KSRL+AA+KA+ A
Sbjct: 61 IADKKIVHKNKAARAKSRLSAAIKAMGA 88


>NMB0463 [J] COG0268 Ribosomal protein S20 Nme Neisseria meningitidis MC58
          Length = 87

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MAN+AQARKRARQ+VKQ AHN+S R+  RTA+K V KA+EAGDKAAA  V+Q SV  ID 
Sbjct: 1  MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDKAAAQAVYQESVKVIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          IADK + HKNKAARHKSRL+A +KALA
Sbjct: 61 IADKGVFHKNKAARHKSRLSAKVKALA 87


>NMA2022 [J] COG0268 Ribosomal protein S20 NmA Neisseria meningitidis
          Z2491
          Length = 87

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MAN+AQARKRARQ+VKQ AHN+S R+  RTA+K V KA+EAGDKAAA  V+Q SV  ID 
Sbjct: 1  MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDKAAAQAVYQESVKVIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          IADK + HKNKAARHKSRL+A +KALA
Sbjct: 61 IADKGVFHKNKAARHKSRLSAKVKALA 87


>PA4563 [J] COG0268 Ribosomal protein S20 Pae Pseudomonas aeruginosa
          Length = 91

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 64/87 (73%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MANT  A+KRA+QA K+ +HN+S RS +RT IK V KAI+A D   A   F A+V  ID 
Sbjct: 1  MANTPSAKKRAKQAEKRRSHNASLRSMVRTYIKNVVKAIDAKDLEKAQAAFTAAVPVIDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
          +ADK IIHKNKAARHKSRL+  +KAL+
Sbjct: 61 MADKGIIHKNKAARHKSRLSGHIKALS 87


>STM0043 [J] COG0268 Ribosomal protein S20 Sty Salmonella typhimurium LT2
          Length = 87

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 56/87 (64%)

Query: 1  MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAVRKAIEAGDKAAATTVFQASVSTIDS 60
          MAN   A+KRA Q+ K   HN+S+RS +RT IK V  AIEAGDKAAA   F      +D 
Sbjct: 1  MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDR 60

Query: 61 IADKKIIHKNKAARHKSRLAAALKALA 87
           A K +IHKNKAARHK+ L A +  LA
Sbjct: 61 QAAKGLIHKNKAARHKANLTAQINKLA 87