BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0607.p         (190 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2976 [M] COG5009 Membrane carboxypeptidase/penicillin-binding...   111   1e-24
PA5045 [M] COG5009 Membrane carboxypeptidase/penicillin-binding ...    95   1e-19
NMB1807 [M] COG5009 Membrane carboxypeptidase/penicillin-binding...    84   2e-16
NMA0655 [M] COG5009 Membrane carboxypeptidase/penicillin-binding...    84   2e-16
aq_624 [M] COG5009 Membrane carboxypeptidase/penicillin-binding ...    82   9e-16

>RSc2976 [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein
           Rso Ralstonia solanacearum
          Length = 801

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 11/165 (6%)

Query: 26  MRTALQKSVNLVAIRTLDAIGLAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGS 85
           +R+ +      +A + L    +AGKTGTTND+FD WF GY   L  V W+GYD P+SLG 
Sbjct: 648 LRSVVSGGTGYLAKQKLGRSDMAGKTGTTNDSFDAWFCGYTPKLVGVAWIGYDNPRSLGD 707

Query: 86  KEFGAQLALPIWVDYMGVALRGTPQSDTPAPAGIRFIDGEPYYENFTPGNGFVASLGVDG 145
           +E G  LALPIW++YM  AL+G P+++   P G+  + G+  YE +  G G VAS+G+  
Sbjct: 708 RETGGGLALPIWINYMSYALKGQPETERQPPEGVVQMAGDWAYEEYANGQG-VASVGLG- 765

Query: 146 GGVVDALSNFFGWSKNPNSETQAAPSSGPAPSSQAPGRDNLYQGH 190
               DAL         P S  +AAPS  P P  +     ++++G+
Sbjct: 766 ----DALPG-----GPPASGPEAAPSLAPTPEQEKQKILDMFRGN 801


>PA5045 [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein
           Pae Pseudomonas aeruginosa
          Length = 822

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 56/85 (65%)

Query: 42  LDAIGLAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYM 101
           L    LAGKTGTTND+ DGWF+GY     T VW+G+DQP++LG +E+G  +ALPIW+ YM
Sbjct: 687 LKRTDLAGKTGTTNDSKDGWFSGYNSDYVTSVWVGFDQPETLGRREYGGTVALPIWIRYM 746

Query: 102 GVALRGTPQSDTPAPAGIRFIDGEP 126
           G AL+  P      P GI  +  +P
Sbjct: 747 GFALKDKPMHTMAEPPGIVSLRIDP 771


>NMB1807 [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein
           Nme Neisseria meningitidis MC58
          Length = 798

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 20  PAGPMAMRTALQKSVNLVAIRTLDAIG---LAGKTGTTNDAFDGWFAGYQRTLATVVWMG 76
           P     M   +Q  V +   R   A+G   +AGKTGTTND  D WF G+   + T V++G
Sbjct: 618 PRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIG 677

Query: 77  YDQPKSLGSKEFGAQLALPIWVDYMGVALRGTPQSDTPAPAGIRFIDGEPYYEN 130
           +D+PKS+G   +G  +A+P+WVDYM  AL+G        P G+   +GE Y + 
Sbjct: 678 FDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKE 731


>NMA0655 [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein
           NmA Neisseria meningitidis Z2491
          Length = 798

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 20  PAGPMAMRTALQKSVNLVAIRTLDAIG---LAGKTGTTNDAFDGWFAGYQRTLATVVWMG 76
           P     M   +Q  V +   R   A+G   +AGKTGTTND  D WF G+   + T V++G
Sbjct: 618 PRNAYIMYKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIG 677

Query: 77  YDQPKSLGSKEFGAQLALPIWVDYMGVALRGTPQSDTPAPAGIRFIDGEPYYEN 130
           +D+PKS+G   +G  +A+P+WVDYM  AL+G        P G+   +GE Y + 
Sbjct: 678 FDKPKSMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKE 731


>aq_624 [M] COG5009 Membrane carboxypeptidase/penicillin-binding protein
           Aae Aquifex aeolicus
          Length = 726

 Score = 81.6 bits (200), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 42  LDAIGLAGKTGTTNDAFDGWFAGYQRTLATVVWMGYDQPKSLGSKEFGAQLALPIWVDYM 101
           LD I +AGKTGTT+D  D WF G+   + T VW+GYD  KSLG    G+++ALPIW+DYM
Sbjct: 606 LDRI-VAGKTGTTDDFQDAWFVGFSPYIVTGVWVGYDVKKSLGKHMSGSRVALPIWIDYM 664

Query: 102 GVALRGTPQSDTPAP 116
            V  R  P  D   P
Sbjct: 665 KVVTRMYPNEDFELP 679