BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0605.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa 113 4e-25 PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa 97 4e-20 NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58 91 2e-18 NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z... 91 2e-18 VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae 87 3e-17 >PA2482 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa Length = 217 Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 7/174 (4%) Query: 28 AACTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTNFRDG-NRQYPLMTYLLDHLSDAYL 86 AAC CHG +G + +PR+AG P YL QL + + G +R++P+M + D L D + Sbjct: 39 AACVTCHGADGMGLAAAGFPRLAGLPAAYLSKQLHDLKQGGSREHPVMKGIADALGDDEI 98 Query: 87 HEIAAYFSAQHPPYPAPQPVEATPAVLER--GRALVMNGDSSKKVPACIACHGQALTGVA 144 +A +A PAP+PVE + R G L + G + +P C+ CHG A +GV Sbjct: 99 QALANTLAA----MPAPKPVELSRVATPRSPGETLAVRGAWERNIPECVTCHGPAGSGVG 154 Query: 145 PAVPGLIGLPRDYINSQFGAWRNGVRRARAPDCMAQITQRLSLEDINAASSWLA 198 A P L G Y+++Q AW+ G RR D M I + LS E+I + S + A Sbjct: 155 EAFPPLQGQGEMYLSNQLRAWQLGTRRNDPNDLMGHIAKSLSEEEIRSVSQFFA 208 >PA5490 [C] COG2863 Cytochrome c553 Pae Pseudomonas aeruginosa Length = 201 Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 8/170 (4%) Query: 30 CTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTNFRDGNRQYPLMTYLLDHLSDAYLHEI 89 C ACHG +G + + + P++AG+ E YL Q+ + +DG R MT LL +LSD L +I Sbjct: 34 CGACHGADGNSPAPNF-PKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADI 92 Query: 90 AAYFSAQHPPYPAPQPVEATPAVLERGRALVMNGDSSKKVPACIACHGQALTGVAPA-VP 148 AAYF++Q A P ++ +G AL G ++ +PAC CH + G+A A P Sbjct: 93 AAYFASQKMSVGM-----ADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFP 147 Query: 149 GLIGLPRDYINSQFGAWRNGVRRARAP-DCMAQITQRLSLEDINAASSWL 197 L G Y+ Q +R G R M I +LS +DI A SS++ Sbjct: 148 HLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYI 197 >NMB1805 [C] COG2863 Cytochrome c553 Nme Neisseria meningitidis MC58 Length = 207 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 20/203 (9%) Query: 7 WIAAAAPVHAQQLPDT-IAQRVAA--CTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTN 63 ++ AA V A D ++VAA C ACH +G S YPR+A + Y+Y+Q Sbjct: 9 FVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN-SGIAMYPRLAAQHTAYIYHQTIG 67 Query: 64 FRDGNRQY---PLMTYLLDHLSDAYLHEIAAYFSAQHPPYPAPQPVEATPAVLERGRALV 120 RDG R + +M ++ +LSD + ++A+++ Q P P E P E G + Sbjct: 68 IRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKE-NP---ELGAKIY 123 Query: 121 MNGDSSKKVPACIACHGQALTGV------APAVPGLIGLPRDYINSQFGAWRNGVRRARA 174 G S KKVPAC++CHG + G+ A P L G + YI Q A+++G R+ Sbjct: 124 RGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRK--- 180 Query: 175 PDCMAQITQRLSLEDINAASSWL 197 M I R+S ED+ A ++++ Sbjct: 181 NTIMEDIANRMSEEDLKAVANFI 203 >NMA0658 [C] COG2863 Cytochrome c553 NmA Neisseria meningitidis Z2491 Length = 207 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 20/203 (9%) Query: 7 WIAAAAPVHAQQLPDT-IAQRVAA--CTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTN 63 ++ AA V A D ++VAA C ACH +G S YPR+A + Y+Y+Q Sbjct: 9 FVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN-SGIAMYPRLAAQHTAYIYHQTIG 67 Query: 64 FRDGNRQY---PLMTYLLDHLSDAYLHEIAAYFSAQHPPYPAPQPVEATPAVLERGRALV 120 RDG R + +M ++ +LSD + ++A+++ Q P P E P E G + Sbjct: 68 IRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAKQQPKSGEANPKE-NP---ELGAKIY 123 Query: 121 MNGDSSKKVPACIACHGQALTGV------APAVPGLIGLPRDYINSQFGAWRNGVRRARA 174 G S KKVPAC++CHG + G+ A P L G + YI Q A+++G R+ Sbjct: 124 RGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLGGQHQAYIVEQMNAYKSGQRK--- 180 Query: 175 PDCMAQITQRLSLEDINAASSWL 197 M I R+S ED+ A ++++ Sbjct: 181 NTIMEDIANRMSEEDLKAVANFI 203 >VC0112 [C] COG2863 Cytochrome c553 Vch Vibrio cholerae Length = 223 Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 16/203 (7%) Query: 6 LWIAAAAPVHAQQLPDTIAQRVAACTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTNFR 65 L + A+ V AQ + + C ACHG +G S YP++AG+ E YL QL + Sbjct: 26 LSVLASCSVWAQGSIEAGKAKSLTCAACHGADGN-SPLTIYPKLAGQHEKYLEKQLKELK 84 Query: 66 DG-------NRQYPLMTYLLDHLSDAYLHEIAAYFSAQHPPYPAPQPVEATPA-VLERGR 117 G R P+M+ + LSD + ++AAY+++ P TP V+ +G+ Sbjct: 85 LGASSGGKQGRYDPVMSAMAMPLSDEDIADLAAYYASM------PISGNTTPEDVVAQGK 138 Query: 118 ALVMNGDSSKKVPACIACHGQALTGVA-PAVPGLIGLPRDYINSQFGAWRNGVRRARAPD 176 L GD+S+ + ACIACHG G P + G DYI +Q +R+G R + Sbjct: 139 VLYTAGDASRGLTACIACHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNE 198 Query: 177 CMAQITQRLSLEDINAASSWLAA 199 M + +L+ DI+ S ++ Sbjct: 199 MMRDVAHKLTDADIDILSKYVGG 221