BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0603.p         (157 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1534 [TK] COG0745 Response regulators consisting of a CheY-li...   175   3e-44
phoB [TK] COG0745 Response regulators consisting of a CheY-like ...   166   2e-41
ZphoB [TK] COG0745 Response regulators consisting of a CheY-like...   166   2e-41
ECs0449 [TK] COG0745 Response regulators consisting of a CheY-li...   166   2e-41
PA5360 [TK] COG0745 Response regulators consisting of a CheY-lik...   165   3e-41

>RSc1534 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 237

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 114/160 (71%), Gaps = 8/160 (5%)

Query: 2   RARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSL 61
           R R+  +IMLTA+  E+DK+ GL+ GADDYVTKPFSPKEL+AR++A+LRR+AP++    +
Sbjct: 73  RTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVV 132

Query: 62  TYGLLGIDTERHRVTVDQQEVE------LDQAEFKLLRYLVAHPERIFSRAQLLDKVWGD 115
               L +D   HRVT    E E      L   EF+LL +L+ HPER+ SR+QLLD+VWGD
Sbjct: 133 AINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLLDQVWGD 192

Query: 116 HTFIEERTVDVHIMRLRKSL--GAAADYVKTVRGMGYKLS 153
           H F+EERTVDVHI RLR +L  G  +  ++TVRG GY+L+
Sbjct: 193 HVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLA 232


>phoB [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Eco
           Escherichia coli K12
          Length = 229

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 3   ARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLT 62
            R   V+MLTA+G EED+V+GL  GADDY+TKPFSPKELVAR++A++RR +P   ++ + 
Sbjct: 74  TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 133

Query: 63  YGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEER 122
              L +D   HRV   ++ +E+   EFKLL + + HPER++SR QLL+ VWG + ++E+R
Sbjct: 134 MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDR 193

Query: 123 TVDVHIMRLRKSL--GAAADYVKTVRGMGYKLS 153
           TVDVHI RLRK+L  G     V+TVRG GY+ S
Sbjct: 194 TVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226


>ZphoB [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain EcZ
           Escherichia coli O157:H7 EDL933
          Length = 229

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 3   ARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLT 62
            R   V+MLTA+G EED+V+GL  GADDY+TKPFSPKELVAR++A++RR +P   ++ + 
Sbjct: 74  TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 133

Query: 63  YGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEER 122
              L +D   HRV   ++ +E+   EFKLL + + HPER++SR QLL+ VWG + ++E+R
Sbjct: 134 MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDR 193

Query: 123 TVDVHIMRLRKSL--GAAADYVKTVRGMGYKLS 153
           TVDVHI RLRK+L  G     V+TVRG GY+ S
Sbjct: 194 TVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226


>ECs0449 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ecs
           Escherichia coli O157:H7
          Length = 229

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 3   ARRYXVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLT 62
            R   V+MLTA+G EED+V+GL  GADDY+TKPFSPKELVAR++A++RR +P   ++ + 
Sbjct: 74  TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 133

Query: 63  YGLLGIDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEER 122
              L +D   HRV   ++ +E+   EFKLL + + HPER++SR QLL+ VWG + ++E+R
Sbjct: 134 MQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDR 193

Query: 123 TVDVHIMRLRKSL--GAAADYVKTVRGMGYKLS 153
           TVDVHI RLRK+L  G     V+TVRG GY+ S
Sbjct: 194 TVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFS 226


>PA5360 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 229

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 8   VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEVGQQSLTYGLLG 67
           +IMLTAKG E++K++GL  GADDY+TKPFSP+ELVAR++A+LRR  P   +  +  G L 
Sbjct: 80  IIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTGPGDSEAPIEVGGLL 139

Query: 68  IDTERHRVTVDQQEVELDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 127
           +D   HRVT+D +  E+   E++LL++ + H ER ++R QLLD+VWG + ++EERTVDVH
Sbjct: 140 LDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWGGNVYVEERTVDVH 199

Query: 128 IMRLRKSLGAA-ADYVKTVRGMGYKLS 153
           I RLRK+LG    + V+TVRG GY+ S
Sbjct: 200 IRRLRKALGEVYENLVQTVRGTGYRFS 226