BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0599.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1525 [J] COG0293 23S rRNA methylase Rso Ralstonia solanacearum     184   5e-47
NMB0799 [J] COG0293 23S rRNA methylase Nme Neisseria meningitidi...   147   8e-36
NMA1008 [J] COG0293 23S rRNA methylase NmA Neisseria meningitidi...   147   8e-36
PA4752 [J] COG0293 23S rRNA methylase Pae Pseudomonas aeruginosa      121   6e-28
XF0094 [J] COG0293 23S rRNA methylase Xfa Xylella fastidiosa 9a5c     119   2e-27

>RSc1525 [J] COG0293 23S rRNA methylase Rso Ralstonia solanacearum
          Length = 221

 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 100/119 (84%), Gaps = 3/119 (2%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MAK K N++WLHDHINDPYVKLAQ+EGYRARAAYKLKEIDE++KLIKPGQVIVDLG+ PG
Sbjct: 1   MAKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPG 60

Query: 61  SWSQYARNKLAG---LEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAIL 116
           SWSQY RNKLA     + G I G I+ +D+LPM+P+ADV FIQGDFREE   +QLE I+
Sbjct: 61  SWSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLETIV 119


>NMB0799 [J] COG0293 23S rRNA methylase Nme Neisseria meningitidis MC58
          Length = 206

 Score =  147 bits (371), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 85/118 (72%), Gaps = 6/118 (5%)

Query: 3   KKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPGSW 62
           + K +K WLH+H+ND YV +AQK+GYRARAAYKL EI+E++KLIKPG V+ DLGS PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 63  SQYARNKLAGLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAILDGRP 120
           SQ A  KL G  G      +  LD+LPM+ I  V FIQGDFRE D L Q E +LD RP
Sbjct: 64  SQVAA-KLTGTSGA-----VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRP 115


>NMA1008 [J] COG0293 23S rRNA methylase NmA Neisseria meningitidis Z2491
          Length = 206

 Score =  147 bits (371), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 85/118 (72%), Gaps = 6/118 (5%)

Query: 3   KKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPGSW 62
           + K +K WLH+H+ND YV +AQK+GYRARAAYKL EI+E++KLIKPG V+ DLGS PGSW
Sbjct: 4   RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63

Query: 63  SQYARNKLAGLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAILDGRP 120
           SQ A  KL G  G      +  LD+LPM+ I  V FIQGDFRE D L Q E +LD RP
Sbjct: 64  SQVAA-KLTGTSGA-----VFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDNRP 115


>PA4752 [J] COG0293 23S rRNA methylase Pae Pseudomonas aeruginosa
          Length = 207

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 7/118 (5%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           MA+ K ++ WL +H +DPYVK+AQ++GYR+RA+YKL EI E++++++PG  +VDLG+ PG
Sbjct: 1   MARSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPG 60

Query: 61  SWSQYARNKLAGLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSL-RQLEAILD 117
            WSQ     +      G RG +I  D+L MD I DV FIQGDF E+    R LEAI D
Sbjct: 61  GWSQVTSRVI------GDRGRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGD 112


>XF0094 [J] COG0293 23S rRNA methylase Xfa Xylella fastidiosa 9a5c
          Length = 213

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 83/120 (69%), Gaps = 6/120 (5%)

Query: 1   MAKKKLNKNWLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPG 60
           M+  K ++ WL +H +DP+VK AQ EG R+RAAYKL+EI + +++++P  V++DLG+ PG
Sbjct: 1   MSHSKSSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPG 60

Query: 61  SWSQYARNKLAGLEGGGIRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAILDGRP 120
            WSQ  R ++      G RG +I LD++ M P+  + F+QGDFR++  L QLE +L G+P
Sbjct: 61  GWSQQIRKQM------GDRGRVIALDIVKMAPLVGIEFLQGDFRDKAVLSQLEIMLKGQP 114